miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11113 3' -55.4 NC_002794.1 + 83871 0.66 0.946689
Target:  5'- uCCcGGuCGGCGCGA-CGGccccGGGCUCGg -3'
miRNA:   3'- -GGuCCuGCCGCGCUuGCUc---UUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 128466 0.66 0.946689
Target:  5'- cCCAGGACgaccggucaccgGGuCGCGGACcGGggGC-CGu -3'
miRNA:   3'- -GGUCCUG------------CC-GCGCUUGcUCuuCGaGU- -5'
11113 3' -55.4 NC_002794.1 + 129846 0.66 0.946689
Target:  5'- gCGGaGCGGaaccuccguCGCGAACGGGggGCgCAc -3'
miRNA:   3'- gGUCcUGCC---------GCGCUUGCUCuuCGaGU- -5'
11113 3' -55.4 NC_002794.1 + 32910 0.67 0.942316
Target:  5'- aCCAgucGGGCGGCaGCaGGucgGCGGGAAGCg-- -3'
miRNA:   3'- -GGU---CCUGCCG-CG-CU---UGCUCUUCGagu -5'
11113 3' -55.4 NC_002794.1 + 9739 0.67 0.942316
Target:  5'- aCCGGGugGGUagGUGGGgGGGggG-UCAg -3'
miRNA:   3'- -GGUCCugCCG--CGCUUgCUCuuCgAGU- -5'
11113 3' -55.4 NC_002794.1 + 4755 0.67 0.942316
Target:  5'- gCUAGGACGGUGCucAUG---GGCUCGa -3'
miRNA:   3'- -GGUCCUGCCGCGcuUGCucuUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 38432 0.67 0.942316
Target:  5'- uCCAuGGCGGCGggcCGGACuGAGGAGC-CGg -3'
miRNA:   3'- -GGUcCUGCCGC---GCUUG-CUCUUCGaGU- -5'
11113 3' -55.4 NC_002794.1 + 36991 0.67 0.942316
Target:  5'- gCAGGuCGGCgagGCGGACccgguaGAGcGGCUCGg -3'
miRNA:   3'- gGUCCuGCCG---CGCUUG------CUCuUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 113491 0.67 0.942316
Target:  5'- gCAGGAgcuCGcGCGCGGcCGAGAgccgcggagggAGCUCc -3'
miRNA:   3'- gGUCCU---GC-CGCGCUuGCUCU-----------UCGAGu -5'
11113 3' -55.4 NC_002794.1 + 96894 0.67 0.937718
Target:  5'- aCGGGGCaGGCGuCGGGCG-GAGGUggCGg -3'
miRNA:   3'- gGUCCUG-CCGC-GCUUGCuCUUCGa-GU- -5'
11113 3' -55.4 NC_002794.1 + 44242 0.67 0.937718
Target:  5'- gCCGGG-CGGCuCGGugcCGGGcGGCUCGg -3'
miRNA:   3'- -GGUCCuGCCGcGCUu--GCUCuUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 91229 0.67 0.937718
Target:  5'- --cGGACGGCGCGGcggccguCGGGcugcGCUCGc -3'
miRNA:   3'- gguCCUGCCGCGCUu------GCUCuu--CGAGU- -5'
11113 3' -55.4 NC_002794.1 + 114614 0.67 0.937718
Target:  5'- uCCAGG-UGGCGCaGcagguccucGGCGcGGAGCUCGa -3'
miRNA:   3'- -GGUCCuGCCGCG-C---------UUGCuCUUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 120144 0.67 0.937718
Target:  5'- aCGGGcCGGUGcCGGACGAcGAGGacCUCGa -3'
miRNA:   3'- gGUCCuGCCGC-GCUUGCU-CUUC--GAGU- -5'
11113 3' -55.4 NC_002794.1 + 178273 0.67 0.937718
Target:  5'- aCCGGaGACGGgGuCGGuCGAGcgacGGCUCGa -3'
miRNA:   3'- -GGUC-CUGCCgC-GCUuGCUCu---UCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 145100 0.67 0.937245
Target:  5'- aCC-GGACGGUccucuacGCGGuguCGGGGcAGCUCAu -3'
miRNA:   3'- -GGuCCUGCCG-------CGCUu--GCUCU-UCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 55294 0.67 0.937245
Target:  5'- aCgAGGGCGGCgGCGGcgucgcggcgggcGCGGGcGGCUUc -3'
miRNA:   3'- -GgUCCUGCCG-CGCU-------------UGCUCuUCGAGu -5'
11113 3' -55.4 NC_002794.1 + 145329 0.67 0.932891
Target:  5'- --cGGGCGGCGCucgggcccGAGCGGGcccGAGCUgGg -3'
miRNA:   3'- gguCCUGCCGCG--------CUUGCUC---UUCGAgU- -5'
11113 3' -55.4 NC_002794.1 + 132580 0.67 0.932891
Target:  5'- aCCGGGugGGCcgcuucacCGGGCGuGAcguGGUUCAg -3'
miRNA:   3'- -GGUCCugCCGc-------GCUUGCuCU---UCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 115633 0.67 0.932891
Target:  5'- gUCAGGugGuucaggGCGUGAGCcAGGAGCUg- -3'
miRNA:   3'- -GGUCCugC------CGCGCUUGcUCUUCGAgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.