miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11113 3' -55.4 NC_002794.1 + 2618 0.69 0.857417
Target:  5'- cCCGGccgcCGGCGCGcguccccagcaAAUGAGGAGCUCc -3'
miRNA:   3'- -GGUCcu--GCCGCGC-----------UUGCUCUUCGAGu -5'
11113 3' -55.4 NC_002794.1 + 2896 0.75 0.576792
Target:  5'- aCCGGG-CGGCGUucuccuggGAAaagGAGAAGCUCAa -3'
miRNA:   3'- -GGUCCuGCCGCG--------CUUg--CUCUUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 4755 0.67 0.942316
Target:  5'- gCUAGGACGGUGCucAUG---GGCUCGa -3'
miRNA:   3'- -GGUCCUGCCGCGcuUGCucuUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 8761 0.66 0.950837
Target:  5'- gUCGcGACGGCGUGAagacgGCGuGGGAGCUgCAg -3'
miRNA:   3'- -GGUcCUGCCGCGCU-----UGC-UCUUCGA-GU- -5'
11113 3' -55.4 NC_002794.1 + 9739 0.67 0.942316
Target:  5'- aCCGGGugGGUagGUGGGgGGGggG-UCAg -3'
miRNA:   3'- -GGUCCugCCG--CGCUUgCUCuuCgAGU- -5'
11113 3' -55.4 NC_002794.1 + 10642 0.68 0.901632
Target:  5'- gCGGGgaGCGGCGCGAgcccgACGAGcgucuggagccgccuGAGCUUc -3'
miRNA:   3'- gGUCC--UGCCGCGCU-----UGCUC---------------UUCGAGu -5'
11113 3' -55.4 NC_002794.1 + 18826 0.67 0.92255
Target:  5'- aCCucGGcCGGCGCGGAgGAGAc-CUCGa -3'
miRNA:   3'- -GGu-CCuGCCGCGCUUgCUCUucGAGU- -5'
11113 3' -55.4 NC_002794.1 + 21518 0.68 0.892709
Target:  5'- uCgAGGACGG-GCGGAuCGGGAucggcuAGCUCc -3'
miRNA:   3'- -GgUCCUGCCgCGCUU-GCUCU------UCGAGu -5'
11113 3' -55.4 NC_002794.1 + 31578 0.68 0.919268
Target:  5'- -aAGG-CGGCGCuGugcaguaagcaauacACGGGGAGCUCGa -3'
miRNA:   3'- ggUCCuGCCGCGcU---------------UGCUCUUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 32910 0.67 0.942316
Target:  5'- aCCAgucGGGCGGCaGCaGGucgGCGGGAAGCg-- -3'
miRNA:   3'- -GGU---CCUGCCG-CG-CU---UGCUCUUCGagu -5'
11113 3' -55.4 NC_002794.1 + 34277 0.66 0.965251
Target:  5'- gCAGG-CGGCcaGCGccAGCGAccgGGAGCUCu -3'
miRNA:   3'- gGUCCuGCCG--CGC--UUGCU---CUUCGAGu -5'
11113 3' -55.4 NC_002794.1 + 35284 0.67 0.92255
Target:  5'- aCCGGGugGGCGUcgugcgcccucGGACG-GAccgccAGUUCAc -3'
miRNA:   3'- -GGUCCugCCGCG-----------CUUGCuCU-----UCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 36991 0.67 0.942316
Target:  5'- gCAGGuCGGCgagGCGGACccgguaGAGcGGCUCGg -3'
miRNA:   3'- gGUCCuGCCG---CGCUUG------CUCuUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 37746 0.71 0.754499
Target:  5'- gCCGGcGGCGGCGCGGcggcgccgGCGGGAgcGGCcgUCGu -3'
miRNA:   3'- -GGUC-CUGCCGCGCU--------UGCUCU--UCG--AGU- -5'
11113 3' -55.4 NC_002794.1 + 37882 0.67 0.92255
Target:  5'- --cGGGCGGCGgGGGCGGuGGcggcggcagcGGCUCGc -3'
miRNA:   3'- gguCCUGCCGCgCUUGCU-CU----------UCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 38432 0.67 0.942316
Target:  5'- uCCAuGGCGGCGggcCGGACuGAGGAGC-CGg -3'
miRNA:   3'- -GGUcCUGCCGC---GCUUG-CUCUUCGaGU- -5'
11113 3' -55.4 NC_002794.1 + 38636 0.78 0.392586
Target:  5'- gCCGGuGCGGCGCG-ACG-GAGGCUCGa -3'
miRNA:   3'- -GGUCcUGCCGCGCuUGCuCUUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 41011 0.69 0.864888
Target:  5'- gCAGGAUGGCGgaGACGAGgcGCa-- -3'
miRNA:   3'- gGUCCUGCCGCgcUUGCUCuuCGagu -5'
11113 3' -55.4 NC_002794.1 + 42592 0.7 0.800014
Target:  5'- -gAGGAgGGCGCGGcggcCGGGAgcgGGCUCu -3'
miRNA:   3'- ggUCCUgCCGCGCUu---GCUCU---UCGAGu -5'
11113 3' -55.4 NC_002794.1 + 42957 0.68 0.899127
Target:  5'- cCCAGcACGGCGUGGAUGuAGGccAGCUg- -3'
miRNA:   3'- -GGUCcUGCCGCGCUUGC-UCU--UCGAgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.