miRNA display CGI


Results 41 - 60 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11113 3' -55.4 NC_002794.1 + 78386 0.68 0.886073
Target:  5'- gCCAGcGACGGCGaCGA-CGAGGc-CUCGc -3'
miRNA:   3'- -GGUC-CUGCCGC-GCUuGCUCUucGAGU- -5'
11113 3' -55.4 NC_002794.1 + 80007 0.68 0.917035
Target:  5'- aCgAGGACGGCGaCGAGgaggcCGGGGAGaccaCUCGc -3'
miRNA:   3'- -GgUCCUGCCGC-GCUU-----GCUCUUC----GAGU- -5'
11113 3' -55.4 NC_002794.1 + 80415 0.66 0.950837
Target:  5'- cCCAGG-UGGCGcCGGGCGGGGccgccgccGGCg-- -3'
miRNA:   3'- -GGUCCuGCCGC-GCUUGCUCU--------UCGagu -5'
11113 3' -55.4 NC_002794.1 + 83871 0.66 0.946689
Target:  5'- uCCcGGuCGGCGCGA-CGGccccGGGCUCGg -3'
miRNA:   3'- -GGuCCuGCCGCGCUuGCUc---UUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 87377 0.72 0.745052
Target:  5'- uUCuGGGCGGCGCGGccagaGCGAGccgcauuuauAGGCUUAg -3'
miRNA:   3'- -GGuCCUGCCGCGCU-----UGCUC----------UUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 91229 0.67 0.937718
Target:  5'- --cGGACGGCGCGGcggccguCGGGcugcGCUCGc -3'
miRNA:   3'- gguCCUGCCGCGCUu------GCUCuu--CGAGU- -5'
11113 3' -55.4 NC_002794.1 + 91292 0.7 0.833856
Target:  5'- aCGuGuCGGCGCuGAGCGAGgcGCUCu -3'
miRNA:   3'- gGUcCuGCCGCG-CUUGCUCuuCGAGu -5'
11113 3' -55.4 NC_002794.1 + 91882 0.7 0.841895
Target:  5'- gCGGcGGCGGcCGCG-ACGAGcAGUUCAc -3'
miRNA:   3'- gGUC-CUGCC-GCGCuUGCUCuUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 92264 0.72 0.745052
Target:  5'- gCUGGcGGCGGCGcCGGGCGAGgcGCgCAa -3'
miRNA:   3'- -GGUC-CUGCCGC-GCUUGCUCuuCGaGU- -5'
11113 3' -55.4 NC_002794.1 + 92307 0.72 0.706398
Target:  5'- gCGGGGCugGGCGCGGGCGgcGGggGCcCGg -3'
miRNA:   3'- gGUCCUG--CCGCGCUUGC--UCuuCGaGU- -5'
11113 3' -55.4 NC_002794.1 + 93152 0.68 0.905322
Target:  5'- uCCGuGGccauCGGCaaGAugGAGGAGUUCAa -3'
miRNA:   3'- -GGU-CCu---GCCGcgCUugCUCUUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 93847 0.66 0.954763
Target:  5'- aUCAuGGACGGcCGCGGcgGCGAGccGCcCGa -3'
miRNA:   3'- -GGU-CCUGCC-GCGCU--UGCUCuuCGaGU- -5'
11113 3' -55.4 NC_002794.1 + 94049 0.71 0.763844
Target:  5'- gCGGcGGCGGUGCGGgggcgGCGGGggGCg-- -3'
miRNA:   3'- gGUC-CUGCCGCGCU-----UGCUCuuCGagu -5'
11113 3' -55.4 NC_002794.1 + 94218 0.68 0.886073
Target:  5'- aCGGuGGCGGCGaCGGGCGGGcGGGC-CGg -3'
miRNA:   3'- gGUC-CUGCCGC-GCUUGCUC-UUCGaGU- -5'
11113 3' -55.4 NC_002794.1 + 94280 0.71 0.782187
Target:  5'- gCGGcGCGGCcCGAGCGGGGggcGGCUCGg -3'
miRNA:   3'- gGUCcUGCCGcGCUUGCUCU---UCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 95762 0.73 0.656785
Target:  5'- gCGGGGCGGCggccGCGAcggcggccgggGCGAGAGGCg-- -3'
miRNA:   3'- gGUCCUGCCG----CGCU-----------UGCUCUUCGagu -5'
11113 3' -55.4 NC_002794.1 + 95850 0.66 0.950837
Target:  5'- gCCGGGGaGGCgGCGGGCGGGccGUUUc -3'
miRNA:   3'- -GGUCCUgCCG-CGCUUGCUCuuCGAGu -5'
11113 3' -55.4 NC_002794.1 + 96894 0.67 0.937718
Target:  5'- aCGGGGCaGGCGuCGGGCG-GAGGUggCGg -3'
miRNA:   3'- gGUCCUG-CCGC-GCUUGCuCUUCGa-GU- -5'
11113 3' -55.4 NC_002794.1 + 97372 0.7 0.817258
Target:  5'- aCCAGGACaGCuacCGcAACGAGAccauguGGCUCAu -3'
miRNA:   3'- -GGUCCUGcCGc--GC-UUGCUCU------UCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 98927 0.66 0.946689
Target:  5'- gCGGGcugGGCGCGGcCGGGAaggggcuggGGCUCGu -3'
miRNA:   3'- gGUCCug-CCGCGCUuGCUCU---------UCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.