miRNA display CGI


Results 61 - 80 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11113 3' -55.4 NC_002794.1 + 102168 0.68 0.917035
Target:  5'- gCCGGGGCcaucguGGCGCGcGGCGAGGaccuGGCg-- -3'
miRNA:   3'- -GGUCCUG------CCGCGC-UUGCUCU----UCGagu -5'
11113 3' -55.4 NC_002794.1 + 102643 0.71 0.754499
Target:  5'- gCCGGcuGGCGGCGCGcuCGgAGGAGCUg- -3'
miRNA:   3'- -GGUC--CUGCCGCGCuuGC-UCUUCGAgu -5'
11113 3' -55.4 NC_002794.1 + 104463 0.66 0.954763
Target:  5'- gCCcGGGCGGCGUGugcaggauGCGGGcGGC-CAc -3'
miRNA:   3'- -GGuCCUGCCGCGCu-------UGCUCuUCGaGU- -5'
11113 3' -55.4 NC_002794.1 + 105544 0.66 0.957382
Target:  5'- uCCGGcGGCGGCucggGCGAACGgauagggugcgcguAGAgcaggAGCUCGu -3'
miRNA:   3'- -GGUC-CUGCCG----CGCUUGC--------------UCU-----UCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 107222 0.74 0.616701
Target:  5'- gCCGGG-CGGCGCGcGACGGGGgcGGCgUCGc -3'
miRNA:   3'- -GGUCCuGCCGCGC-UUGCUCU--UCG-AGU- -5'
11113 3' -55.4 NC_002794.1 + 107626 0.66 0.961966
Target:  5'- aCGGuGGCGGUGaCGAA-GAGGAGCg-- -3'
miRNA:   3'- gGUC-CUGCCGC-GCUUgCUCUUCGagu -5'
11113 3' -55.4 NC_002794.1 + 107879 0.69 0.872158
Target:  5'- gCGGaGGCGGCGCGG-CGGGugcGGCUg- -3'
miRNA:   3'- gGUC-CUGCCGCGCUuGCUCu--UCGAgu -5'
11113 3' -55.4 NC_002794.1 + 108341 0.7 0.817258
Target:  5'- gCAGGAggaggUGGCG-GAGCGGGGAGCg-- -3'
miRNA:   3'- gGUCCU-----GCCGCgCUUGCUCUUCGagu -5'
11113 3' -55.4 NC_002794.1 + 108372 0.71 0.763844
Target:  5'- -gAGGACcgGGCGCcgGAGCGGGGAGCg-- -3'
miRNA:   3'- ggUCCUG--CCGCG--CUUGCUCUUCGagu -5'
11113 3' -55.4 NC_002794.1 + 111322 0.66 0.965251
Target:  5'- gCCGGGccaGCGGCGCGGGcCGcAGAucuGC-CGg -3'
miRNA:   3'- -GGUCC---UGCCGCGCUU-GC-UCUu--CGaGU- -5'
11113 3' -55.4 NC_002794.1 + 111898 0.68 0.899127
Target:  5'- uCCAGGGCGaucuGC-CGuuucguCGAGAGGCUCu -3'
miRNA:   3'- -GGUCCUGC----CGcGCuu----GCUCUUCGAGu -5'
11113 3' -55.4 NC_002794.1 + 112305 0.7 0.817258
Target:  5'- cCCGGGuccgacuuCGGCGcCGAcgGCGGGGAGCg-- -3'
miRNA:   3'- -GGUCCu-------GCCGC-GCU--UGCUCUUCGagu -5'
11113 3' -55.4 NC_002794.1 + 112341 0.72 0.696562
Target:  5'- gCCGGccGGCGGCGCcggcggcgGGGCGGGGAGCUg- -3'
miRNA:   3'- -GGUC--CUGCCGCG--------CUUGCUCUUCGAgu -5'
11113 3' -55.4 NC_002794.1 + 112630 0.66 0.954763
Target:  5'- uCCAcGGGCGGCuucuCGAGCagcaggcAGAGGCUCu -3'
miRNA:   3'- -GGU-CCUGCCGc---GCUUGc------UCUUCGAGu -5'
11113 3' -55.4 NC_002794.1 + 113491 0.67 0.942316
Target:  5'- gCAGGAgcuCGcGCGCGGcCGAGAgccgcggagggAGCUCc -3'
miRNA:   3'- gGUCCU---GC-CGCGCUuGCUCU-----------UCGAGu -5'
11113 3' -55.4 NC_002794.1 + 114614 0.67 0.937718
Target:  5'- uCCAGG-UGGCGCaGcagguccucGGCGcGGAGCUCGa -3'
miRNA:   3'- -GGUCCuGCCGCG-C---------UUGCuCUUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 115633 0.67 0.932891
Target:  5'- gUCAGGugGuucaggGCGUGAGCcAGGAGCUg- -3'
miRNA:   3'- -GGUCCugC------CGCGCUUGcUCUUCGAgu -5'
11113 3' -55.4 NC_002794.1 + 115750 0.71 0.763844
Target:  5'- aUCAGGuACGGCGCGAuCGGc--GCUCGa -3'
miRNA:   3'- -GGUCC-UGCCGCGCUuGCUcuuCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 115885 0.74 0.596696
Target:  5'- uCCGGGGCGucCGCGGagcGCGGGggGUUCGu -3'
miRNA:   3'- -GGUCCUGCc-GCGCU---UGCUCuuCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 117860 0.7 0.825641
Target:  5'- aCgGGGGCuGGCGCGcca-GGGAGCUCAg -3'
miRNA:   3'- -GgUCCUG-CCGCGCuugcUCUUCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.