Results 81 - 100 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11113 | 3' | -55.4 | NC_002794.1 | + | 120144 | 0.67 | 0.937718 |
Target: 5'- aCGGGcCGGUGcCGGACGAcGAGGacCUCGa -3' miRNA: 3'- gGUCCuGCCGC-GCUUGCU-CUUC--GAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 122539 | 0.67 | 0.927835 |
Target: 5'- aCCAGGACgucgaGGUGUGGcuggACGAGAAcGCgCAg -3' miRNA: 3'- -GGUCCUG-----CCGCGCU----UGCUCUU-CGaGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 123808 | 0.68 | 0.899127 |
Target: 5'- uUCGGG--GGCGCGGACGAGcagGAGCg-- -3' miRNA: 3'- -GGUCCugCCGCGCUUGCUC---UUCGagu -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 125752 | 0.68 | 0.897225 |
Target: 5'- gCGGGACGGCggccgGCGGcucgccacccggcuGCGAGc-GCUCAa -3' miRNA: 3'- gGUCCUGCCG-----CGCU--------------UGCUCuuCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 127691 | 0.69 | 0.869998 |
Target: 5'- gUCGGGGCGaCGUGggUGGGAcaggagaacgauggGGCUCGc -3' miRNA: 3'- -GGUCCUGCcGCGCuuGCUCU--------------UCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 128093 | 0.69 | 0.864888 |
Target: 5'- gUCGGcGACGGgGagcucGACGGGggGCUCGg -3' miRNA: 3'- -GGUC-CUGCCgCgc---UUGCUCuuCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 128466 | 0.66 | 0.946689 |
Target: 5'- cCCAGGACgaccggucaccgGGuCGCGGACcGGggGC-CGu -3' miRNA: 3'- -GGUCCUG------------CC-GCGCUUGcUCuuCGaGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 128944 | 0.66 | 0.961966 |
Target: 5'- uCC-GGugGagccuGCGcCGGACGAGucGCUCGa -3' miRNA: 3'- -GGuCCugC-----CGC-GCUUGCUCuuCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 129225 | 0.75 | 0.537484 |
Target: 5'- --uGGAUaGGCGCGAACGGGcGGCUCc -3' miRNA: 3'- gguCCUG-CCGCGCUUGCUCuUCGAGu -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 129333 | 0.75 | 0.547233 |
Target: 5'- cCCGGGGCGGCGguuuccaGAACGGGguGaCUCAa -3' miRNA: 3'- -GGUCCUGCCGCg------CUUGCUCuuC-GAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 129846 | 0.66 | 0.946689 |
Target: 5'- gCGGaGCGGaaccuccguCGCGAACGGGggGCgCAc -3' miRNA: 3'- gGUCcUGCC---------GCGCUUGCUCuuCGaGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 130018 | 0.66 | 0.961966 |
Target: 5'- gCGGGuCGGCcuCGcGCGAGGAGCg-- -3' miRNA: 3'- gGUCCuGCCGc-GCuUGCUCUUCGagu -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 132580 | 0.67 | 0.932891 |
Target: 5'- aCCGGGugGGCcgcuucacCGGGCGuGAcguGGUUCAg -3' miRNA: 3'- -GGUCCugCCGc-------GCUUGCuCU---UCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 134122 | 0.76 | 0.518171 |
Target: 5'- uCCGuccGACGGCGCGGcgaGCGcGGAAGCUCGg -3' miRNA: 3'- -GGUc--CUGCCGCGCU---UGC-UCUUCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 138707 | 0.72 | 0.715199 |
Target: 5'- -gAGGGCGGCGUGGAcucgcguCGAGccGGCUCGa -3' miRNA: 3'- ggUCCUGCCGCGCUU-------GCUCu-UCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 139474 | 0.66 | 0.958111 |
Target: 5'- gCCAGGACggugguguagaugGGCGCGGGCGcGcuGCa-- -3' miRNA: 3'- -GGUCCUG-------------CCGCGCUUGCuCuuCGagu -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 139997 | 0.77 | 0.462062 |
Target: 5'- gCGGGACGGUGCGggUG-GAGGCcgCGg -3' miRNA: 3'- gGUCCUGCCGCGCuuGCuCUUCGa-GU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 140035 | 0.75 | 0.547233 |
Target: 5'- cCCGcGGGCGGCGgGAgacACGgaaAGggGCUCAc -3' miRNA: 3'- -GGU-CCUGCCGCgCU---UGC---UCuuCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 140186 | 0.69 | 0.879221 |
Target: 5'- gUCGGcGACGGCGuCGu-CGAGggGCg-- -3' miRNA: 3'- -GGUC-CUGCCGC-GCuuGCUCuuCGagu -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 141425 | 0.72 | 0.72588 |
Target: 5'- uCgGGGGCGGCGgGGGCGccGGggGCg-- -3' miRNA: 3'- -GgUCCUGCCGCgCUUGC--UCuuCGagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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