miRNA display CGI


Results 41 - 60 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11113 3' -55.4 NC_002794.1 + 132580 0.67 0.932891
Target:  5'- aCCGGGugGGCcgcuucacCGGGCGuGAcguGGUUCAg -3'
miRNA:   3'- -GGUCCugCCGc-------GCUUGCuCU---UCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 130018 0.66 0.961966
Target:  5'- gCGGGuCGGCcuCGcGCGAGGAGCg-- -3'
miRNA:   3'- gGUCCuGCCGc-GCuUGCUCUUCGagu -5'
11113 3' -55.4 NC_002794.1 + 129846 0.66 0.946689
Target:  5'- gCGGaGCGGaaccuccguCGCGAACGGGggGCgCAc -3'
miRNA:   3'- gGUCcUGCC---------GCGCUUGCUCuuCGaGU- -5'
11113 3' -55.4 NC_002794.1 + 129333 0.75 0.547233
Target:  5'- cCCGGGGCGGCGguuuccaGAACGGGguGaCUCAa -3'
miRNA:   3'- -GGUCCUGCCGCg------CUUGCUCuuC-GAGU- -5'
11113 3' -55.4 NC_002794.1 + 129225 0.75 0.537484
Target:  5'- --uGGAUaGGCGCGAACGGGcGGCUCc -3'
miRNA:   3'- gguCCUG-CCGCGCUUGCUCuUCGAGu -5'
11113 3' -55.4 NC_002794.1 + 128944 0.66 0.961966
Target:  5'- uCC-GGugGagccuGCGcCGGACGAGucGCUCGa -3'
miRNA:   3'- -GGuCCugC-----CGC-GCUUGCUCuuCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 128466 0.66 0.946689
Target:  5'- cCCAGGACgaccggucaccgGGuCGCGGACcGGggGC-CGu -3'
miRNA:   3'- -GGUCCUG------------CC-GCGCUUGcUCuuCGaGU- -5'
11113 3' -55.4 NC_002794.1 + 128093 0.69 0.864888
Target:  5'- gUCGGcGACGGgGagcucGACGGGggGCUCGg -3'
miRNA:   3'- -GGUC-CUGCCgCgc---UUGCUCuuCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 127691 0.69 0.869998
Target:  5'- gUCGGGGCGaCGUGggUGGGAcaggagaacgauggGGCUCGc -3'
miRNA:   3'- -GGUCCUGCcGCGCuuGCUCU--------------UCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 125752 0.68 0.897225
Target:  5'- gCGGGACGGCggccgGCGGcucgccacccggcuGCGAGc-GCUCAa -3'
miRNA:   3'- gGUCCUGCCG-----CGCU--------------UGCUCuuCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 123808 0.68 0.899127
Target:  5'- uUCGGG--GGCGCGGACGAGcagGAGCg-- -3'
miRNA:   3'- -GGUCCugCCGCGCUUGCUC---UUCGagu -5'
11113 3' -55.4 NC_002794.1 + 122539 0.67 0.927835
Target:  5'- aCCAGGACgucgaGGUGUGGcuggACGAGAAcGCgCAg -3'
miRNA:   3'- -GGUCCUG-----CCGCGCU----UGCUCUU-CGaGU- -5'
11113 3' -55.4 NC_002794.1 + 120144 0.67 0.937718
Target:  5'- aCGGGcCGGUGcCGGACGAcGAGGacCUCGa -3'
miRNA:   3'- gGUCCuGCCGC-GCUUGCU-CUUC--GAGU- -5'
11113 3' -55.4 NC_002794.1 + 117860 0.7 0.825641
Target:  5'- aCgGGGGCuGGCGCGcca-GGGAGCUCAg -3'
miRNA:   3'- -GgUCCUG-CCGCGCuugcUCUUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 115885 0.74 0.596696
Target:  5'- uCCGGGGCGucCGCGGagcGCGGGggGUUCGu -3'
miRNA:   3'- -GGUCCUGCc-GCGCU---UGCUCuuCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 115750 0.71 0.763844
Target:  5'- aUCAGGuACGGCGCGAuCGGc--GCUCGa -3'
miRNA:   3'- -GGUCC-UGCCGCGCUuGCUcuuCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 115633 0.67 0.932891
Target:  5'- gUCAGGugGuucaggGCGUGAGCcAGGAGCUg- -3'
miRNA:   3'- -GGUCCugC------CGCGCUUGcUCUUCGAgu -5'
11113 3' -55.4 NC_002794.1 + 114614 0.67 0.937718
Target:  5'- uCCAGG-UGGCGCaGcagguccucGGCGcGGAGCUCGa -3'
miRNA:   3'- -GGUCCuGCCGCG-C---------UUGCuCUUCGAGU- -5'
11113 3' -55.4 NC_002794.1 + 113491 0.67 0.942316
Target:  5'- gCAGGAgcuCGcGCGCGGcCGAGAgccgcggagggAGCUCc -3'
miRNA:   3'- gGUCCU---GC-CGCGCUuGCUCU-----------UCGAGu -5'
11113 3' -55.4 NC_002794.1 + 112630 0.66 0.954763
Target:  5'- uCCAcGGGCGGCuucuCGAGCagcaggcAGAGGCUCu -3'
miRNA:   3'- -GGU-CCUGCCGc---GCUUGc------UCUUCGAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.