Results 41 - 60 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11113 | 3' | -55.4 | NC_002794.1 | + | 56377 | 0.66 | 0.961966 |
Target: 5'- cUCGGGAuccacCGGCaCGGauuGCGAGAGGCgcgCAu -3' miRNA: 3'- -GGUCCU-----GCCGcGCU---UGCUCUUCGa--GU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 34277 | 0.66 | 0.965251 |
Target: 5'- gCAGG-CGGCcaGCGccAGCGAccgGGAGCUCu -3' miRNA: 3'- gGUCCuGCCG--CGC--UUGCU---CUUCGAGu -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 184513 | 0.66 | 0.965251 |
Target: 5'- gCGGGccccgcgcGCGGCGCGGGCGAcGccGCcCAc -3' miRNA: 3'- gGUCC--------UGCCGCGCUUGCU-CuuCGaGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 111322 | 0.66 | 0.965251 |
Target: 5'- gCCGGGccaGCGGCGCGGGcCGcAGAucuGC-CGg -3' miRNA: 3'- -GGUCC---UGCCGCGCUU-GC-UCUu--CGaGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 182293 | 0.66 | 0.965251 |
Target: 5'- aCGGGGCGG-GUGGACGGGcagacGGGCg-- -3' miRNA: 3'- gGUCCUGCCgCGCUUGCUC-----UUCGagu -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 112630 | 0.66 | 0.954763 |
Target: 5'- uCCAcGGGCGGCuucuCGAGCagcaggcAGAGGCUCu -3' miRNA: 3'- -GGU-CCUGCCGc---GCUUGc------UCUUCGAGu -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 95850 | 0.66 | 0.950837 |
Target: 5'- gCCGGGGaGGCgGCGGGCGGGccGUUUc -3' miRNA: 3'- -GGUCCUgCCG-CGCUUGCUCuuCGAGu -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 9739 | 0.67 | 0.942316 |
Target: 5'- aCCGGGugGGUagGUGGGgGGGggG-UCAg -3' miRNA: 3'- -GGUCCugCCG--CGCUUgCUCuuCgAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 4755 | 0.67 | 0.942316 |
Target: 5'- gCUAGGACGGUGCucAUG---GGCUCGa -3' miRNA: 3'- -GGUCCUGCCGCGcuUGCucuUCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 38432 | 0.67 | 0.942316 |
Target: 5'- uCCAuGGCGGCGggcCGGACuGAGGAGC-CGg -3' miRNA: 3'- -GGUcCUGCCGC---GCUUG-CUCUUCGaGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 36991 | 0.67 | 0.942316 |
Target: 5'- gCAGGuCGGCgagGCGGACccgguaGAGcGGCUCGg -3' miRNA: 3'- gGUCCuGCCG---CGCUUG------CUCuUCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 113491 | 0.67 | 0.942316 |
Target: 5'- gCAGGAgcuCGcGCGCGGcCGAGAgccgcggagggAGCUCc -3' miRNA: 3'- gGUCCU---GC-CGCGCUuGCUCU-----------UCGAGu -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 98927 | 0.66 | 0.946689 |
Target: 5'- gCGGGcugGGCGCGGcCGGGAaggggcuggGGCUCGu -3' miRNA: 3'- gGUCCug-CCGCGCUuGCUCU---------UCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 83871 | 0.66 | 0.946689 |
Target: 5'- uCCcGGuCGGCGCGA-CGGccccGGGCUCGg -3' miRNA: 3'- -GGuCCuGCCGCGCUuGCUc---UUCGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 32910 | 0.67 | 0.942316 |
Target: 5'- aCCAgucGGGCGGCaGCaGGucgGCGGGAAGCg-- -3' miRNA: 3'- -GGU---CCUGCCG-CG-CU---UGCUCUUCGagu -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 128466 | 0.66 | 0.946689 |
Target: 5'- cCCAGGACgaccggucaccgGGuCGCGGACcGGggGC-CGu -3' miRNA: 3'- -GGUCCUG------------CC-GCGCUUGcUCuuCGaGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 129846 | 0.66 | 0.946689 |
Target: 5'- gCGGaGCGGaaccuccguCGCGAACGGGggGCgCAc -3' miRNA: 3'- gGUCcUGCC---------GCGCUUGCUCuuCGaGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 8761 | 0.66 | 0.950837 |
Target: 5'- gUCGcGACGGCGUGAagacgGCGuGGGAGCUgCAg -3' miRNA: 3'- -GGUcCUGCCGCGCU-----UGC-UCUUCGA-GU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 149463 | 0.66 | 0.950837 |
Target: 5'- -gGGGGCGGuCGagGAGCGAGGGggggcggcauGCUCGg -3' miRNA: 3'- ggUCCUGCC-GCg-CUUGCUCUU----------CGAGU- -5' |
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11113 | 3' | -55.4 | NC_002794.1 | + | 80415 | 0.66 | 0.950837 |
Target: 5'- cCCAGG-UGGCGcCGGGCGGGGccgccgccGGCg-- -3' miRNA: 3'- -GGUCCuGCCGC-GCUUGCUCU--------UCGagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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