miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11113 5' -61 NC_002794.1 + 188236 0.66 0.831672
Target:  5'- aUCgUCGUCgucgaCCGgcggCGGCGgCGguagCGGCg -3'
miRNA:   3'- -GGgAGCAGag---GGCa---GCCGC-GCa---GCCG- -5'
11113 5' -61 NC_002794.1 + 66398 0.66 0.831672
Target:  5'- uCCC-CGUCgUCCCGcCGaccGUGCGaagaCGGCg -3'
miRNA:   3'- -GGGaGCAG-AGGGCaGC---CGCGCa---GCCG- -5'
11113 5' -61 NC_002794.1 + 150520 0.66 0.831672
Target:  5'- cCCCUCcUCggcCCCGUagccgggcCGGCGCcaUGGCc -3'
miRNA:   3'- -GGGAGcAGa--GGGCA--------GCCGCGcaGCCG- -5'
11113 5' -61 NC_002794.1 + 22841 0.66 0.831672
Target:  5'- uCCUUCGUUuucguccgaggaUCCCGgacguccCGGC-CGUCGcGCg -3'
miRNA:   3'- -GGGAGCAG------------AGGGCa------GCCGcGCAGC-CG- -5'
11113 5' -61 NC_002794.1 + 75460 0.66 0.823847
Target:  5'- gCCUCGgcgC-CCCGUaccaCGGCGCcgagaCGGCc -3'
miRNA:   3'- gGGAGCa--GaGGGCA----GCCGCGca---GCCG- -5'
11113 5' -61 NC_002794.1 + 66224 0.66 0.823847
Target:  5'- aCCUCcUCUCCUucuUCGGCcggGCGcuugCGGCg -3'
miRNA:   3'- gGGAGcAGAGGGc--AGCCG---CGCa---GCCG- -5'
11113 5' -61 NC_002794.1 + 70889 0.66 0.823847
Target:  5'- cUCCUCGagcgCCagGUCGGUGagcaCGUCGGCc -3'
miRNA:   3'- -GGGAGCaga-GGg-CAGCCGC----GCAGCCG- -5'
11113 5' -61 NC_002794.1 + 82425 0.66 0.815871
Target:  5'- gUCUUCGUCUUCCcUCaGCucGCGgcUCGGCa -3'
miRNA:   3'- -GGGAGCAGAGGGcAGcCG--CGC--AGCCG- -5'
11113 5' -61 NC_002794.1 + 54973 0.66 0.815871
Target:  5'- cCCCUUGcacgaCCCGccgCGGCGaCGgCGGCg -3'
miRNA:   3'- -GGGAGCaga--GGGCa--GCCGC-GCaGCCG- -5'
11113 5' -61 NC_002794.1 + 134376 0.66 0.815871
Target:  5'- aCUUUCGUUUCgaCCG-CGGCGauuUCGGCa -3'
miRNA:   3'- -GGGAGCAGAG--GGCaGCCGCgc-AGCCG- -5'
11113 5' -61 NC_002794.1 + 156287 0.66 0.815871
Target:  5'- gUCUCGUUcucauaaucggUCUCGUCGuCGCG-CGGCc -3'
miRNA:   3'- gGGAGCAG-----------AGGGCAGCcGCGCaGCCG- -5'
11113 5' -61 NC_002794.1 + 37718 0.66 0.815871
Target:  5'- cUCCUCGcgaCCCGcgagcggCGGCGCcGcCGGCg -3'
miRNA:   3'- -GGGAGCagaGGGCa------GCCGCG-CaGCCG- -5'
11113 5' -61 NC_002794.1 + 114739 0.66 0.814259
Target:  5'- -gUUCGUCgagccggcgccgCCCGcCGGCGCcgguccUCGGCg -3'
miRNA:   3'- ggGAGCAGa-----------GGGCaGCCGCGc-----AGCCG- -5'
11113 5' -61 NC_002794.1 + 12204 0.66 0.807752
Target:  5'- gCCgCUCGga-CgUGcCGGCgGCGUCGGCg -3'
miRNA:   3'- -GG-GAGCagaGgGCaGCCG-CGCAGCCG- -5'
11113 5' -61 NC_002794.1 + 537 0.66 0.807752
Target:  5'- cCCCUUcUUggcaucuugCCCGgccUCGGCGCGgcggUGGCa -3'
miRNA:   3'- -GGGAGcAGa--------GGGC---AGCCGCGCa---GCCG- -5'
11113 5' -61 NC_002794.1 + 81308 0.66 0.807752
Target:  5'- aCCaCUCacCUCCCGUCGGCcaagcCG-CGGUa -3'
miRNA:   3'- -GG-GAGcaGAGGGCAGCCGc----GCaGCCG- -5'
11113 5' -61 NC_002794.1 + 147203 0.66 0.807752
Target:  5'- aCUCUugcCGUCgggCCgGggcCGGgGCGUUGGCg -3'
miRNA:   3'- -GGGA---GCAGa--GGgCa--GCCgCGCAGCCG- -5'
11113 5' -61 NC_002794.1 + 589 0.66 0.807752
Target:  5'- aCCCUCGg--UCCGUUcguggccgGGUGCGgucaggCGGCc -3'
miRNA:   3'- -GGGAGCagaGGGCAG--------CCGCGCa-----GCCG- -5'
11113 5' -61 NC_002794.1 + 61879 0.66 0.799495
Target:  5'- gCCgUCGUCggcgCCgCG-CGGCgaGCG-CGGCg -3'
miRNA:   3'- -GGgAGCAGa---GG-GCaGCCG--CGCaGCCG- -5'
11113 5' -61 NC_002794.1 + 178921 0.66 0.799495
Target:  5'- gCCUCGgcgugUUCCUGUCGGCucaucuuguccGCcaCGGCc -3'
miRNA:   3'- gGGAGCa----GAGGGCAGCCG-----------CGcaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.