miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11114 3' -55.1 NC_002794.1 + 185795 0.66 0.963437
Target:  5'- gCGCggggaCCCACaucGCCGGGAUCUcCGGGa -3'
miRNA:   3'- -GCGa----GGGUGa--UGGCUCUAGAcGUCUc -5'
11114 3' -55.1 NC_002794.1 + 72740 0.66 0.963437
Target:  5'- gCGCUCCCGCggcgGCCGccgaccgagcGGAUCUuaaauaGC-GAGa -3'
miRNA:   3'- -GCGAGGGUGa---UGGC----------UCUAGA------CGuCUC- -5'
11114 3' -55.1 NC_002794.1 + 192139 0.66 0.952455
Target:  5'- uGUUgCUGCUGCCGGcgcGGUCgcgGCGGAGc -3'
miRNA:   3'- gCGAgGGUGAUGGCU---CUAGa--CGUCUC- -5'
11114 3' -55.1 NC_002794.1 + 127338 0.66 0.94835
Target:  5'- aGCg-CCGCUGCCGAGAcgcUCgcgGCGGcGg -3'
miRNA:   3'- gCGagGGUGAUGGCUCU---AGa--CGUCuC- -5'
11114 3' -55.1 NC_002794.1 + 68890 0.67 0.939451
Target:  5'- cCGUUCCCacgGCUACCGAucgcGUC-GCGGGGc -3'
miRNA:   3'- -GCGAGGG---UGAUGGCUc---UAGaCGUCUC- -5'
11114 3' -55.1 NC_002794.1 + 13031 0.67 0.918855
Target:  5'- uGUUCCUcgGgUACCGGcGUCUGCGGAa -3'
miRNA:   3'- gCGAGGG--UgAUGGCUcUAGACGUCUc -5'
11114 3' -55.1 NC_002794.1 + 50449 0.67 0.918855
Target:  5'- gGCaCCCG-UGCCGcAGAUC-GCAGAGg -3'
miRNA:   3'- gCGaGGGUgAUGGC-UCUAGaCGUCUC- -5'
11114 3' -55.1 NC_002794.1 + 32515 0.68 0.91312
Target:  5'- gGCUCCCGCcgUGCCGGuGAUgaGCAaGAc -3'
miRNA:   3'- gCGAGGGUG--AUGGCU-CUAgaCGU-CUc -5'
11114 3' -55.1 NC_002794.1 + 44036 0.68 0.900954
Target:  5'- uCGCUCuCCGCccCCGGGGUCcGCGGcAGc -3'
miRNA:   3'- -GCGAG-GGUGauGGCUCUAGaCGUC-UC- -5'
11114 3' -55.1 NC_002794.1 + 123048 0.68 0.900954
Target:  5'- gCGUguacggCCCGCUGCUGGGGacgaUGCAGAa -3'
miRNA:   3'- -GCGa-----GGGUGAUGGCUCUag--ACGUCUc -5'
11114 3' -55.1 NC_002794.1 + 190382 0.68 0.881001
Target:  5'- uGCUCCCGCUccugcAUCGAGAUC-GCGu-- -3'
miRNA:   3'- gCGAGGGUGA-----UGGCUCUAGaCGUcuc -5'
11114 3' -55.1 NC_002794.1 + 51987 0.69 0.866607
Target:  5'- gCGCUCggCCGCUACCGAGA---GCAGu- -3'
miRNA:   3'- -GCGAG--GGUGAUGGCUCUagaCGUCuc -5'
11114 3' -55.1 NC_002794.1 + 29387 0.71 0.745754
Target:  5'- aCGCUCUCACcACCGGGG--UGguGAGa -3'
miRNA:   3'- -GCGAGGGUGaUGGCUCUagACguCUC- -5'
11114 3' -55.1 NC_002794.1 + 90121 0.72 0.71656
Target:  5'- cCGUgagucuguaCCGCUAcguCCGAGAUCUGCGGAa -3'
miRNA:   3'- -GCGag-------GGUGAU---GGCUCUAGACGUCUc -5'
11114 3' -55.1 NC_002794.1 + 113496 0.73 0.636231
Target:  5'- aGCUCgCGCgcgGCCGAGAgCcGCGGAGg -3'
miRNA:   3'- gCGAGgGUGa--UGGCUCUaGaCGUCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.