miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11114 5' -58.4 NC_002794.1 + 105401 0.66 0.903849
Target:  5'- cGGCCgCCGCG-CgGAucUCGGCcuccaGGGUGGc -3'
miRNA:   3'- -CUGG-GGCGCuGgCUu-AGCCG-----CUCACC- -5'
11114 5' -58.4 NC_002794.1 + 60465 0.66 0.903849
Target:  5'- cGCuCCCGCGACUGcauccgCGGCGAcacGGa -3'
miRNA:   3'- cUG-GGGCGCUGGCuua---GCCGCUca-CC- -5'
11114 5' -58.4 NC_002794.1 + 193742 0.66 0.903849
Target:  5'- --gCCCGCGGCU---UCGGCGAGcGa -3'
miRNA:   3'- cugGGGCGCUGGcuuAGCCGCUCaCc -5'
11114 5' -58.4 NC_002794.1 + 53264 0.66 0.903849
Target:  5'- cGCCgCGCGACaaCGGggCGGCGAGcGa -3'
miRNA:   3'- cUGGgGCGCUG--GCUuaGCCGCUCaCc -5'
11114 5' -58.4 NC_002794.1 + 139004 0.66 0.903849
Target:  5'- aGGCUuuGCGGCUGAAgagcucgccgCGGCGAaacUGGc -3'
miRNA:   3'- -CUGGggCGCUGGCUUa---------GCCGCUc--ACC- -5'
11114 5' -58.4 NC_002794.1 + 96719 0.66 0.903849
Target:  5'- -uCCCC-CGGCCGAGcCGGCGAc--- -3'
miRNA:   3'- cuGGGGcGCUGGCUUaGCCGCUcacc -5'
11114 5' -58.4 NC_002794.1 + 48556 0.66 0.903849
Target:  5'- cACUCCGcCGGCCGcccguccaGAUgGGCGAGccGGa -3'
miRNA:   3'- cUGGGGC-GCUGGC--------UUAgCCGCUCa-CC- -5'
11114 5' -58.4 NC_002794.1 + 89515 0.66 0.897774
Target:  5'- aGACCgCGUaGGCCaGAGUCGGCgGAGg-- -3'
miRNA:   3'- -CUGGgGCG-CUGG-CUUAGCCG-CUCacc -5'
11114 5' -58.4 NC_002794.1 + 17983 0.66 0.897774
Target:  5'- uGGCgCCCaCGGCCGc--CGGCGAGUa- -3'
miRNA:   3'- -CUG-GGGcGCUGGCuuaGCCGCUCAcc -5'
11114 5' -58.4 NC_002794.1 + 131714 0.66 0.897774
Target:  5'- gGACCCCgagaGCGAgCGAGcgGGCGAGa-- -3'
miRNA:   3'- -CUGGGG----CGCUgGCUUagCCGCUCacc -5'
11114 5' -58.4 NC_002794.1 + 151834 0.66 0.897774
Target:  5'- -cCCCCGaCG-CCGu-UCGGCGAGg-- -3'
miRNA:   3'- cuGGGGC-GCuGGCuuAGCCGCUCacc -5'
11114 5' -58.4 NC_002794.1 + 12509 0.66 0.897774
Target:  5'- aGCCgCuCGACCGg--CGGCuGGGUGGa -3'
miRNA:   3'- cUGGgGcGCUGGCuuaGCCG-CUCACC- -5'
11114 5' -58.4 NC_002794.1 + 122305 0.66 0.89149
Target:  5'- aGugCCCGCuGGCCGucgcCGuGCGcGUGGc -3'
miRNA:   3'- -CugGGGCG-CUGGCuua-GC-CGCuCACC- -5'
11114 5' -58.4 NC_002794.1 + 130294 0.66 0.89149
Target:  5'- cGCuCCCGgGuCCGGAaCGGCGAGa-- -3'
miRNA:   3'- cUG-GGGCgCuGGCUUaGCCGCUCacc -5'
11114 5' -58.4 NC_002794.1 + 86991 0.66 0.89149
Target:  5'- -gUCCgGCGGCUu--UCGGCGGcGUGGg -3'
miRNA:   3'- cuGGGgCGCUGGcuuAGCCGCU-CACC- -5'
11114 5' -58.4 NC_002794.1 + 79430 0.66 0.885
Target:  5'- gGGCCCgGCGGCgGcggCGGCGAccGGc -3'
miRNA:   3'- -CUGGGgCGCUGgCuuaGCCGCUcaCC- -5'
11114 5' -58.4 NC_002794.1 + 185467 0.66 0.885
Target:  5'- aACgCCGCGGgCGGcggccgCGGCGAG-GGg -3'
miRNA:   3'- cUGgGGCGCUgGCUua----GCCGCUCaCC- -5'
11114 5' -58.4 NC_002794.1 + 79809 0.66 0.885
Target:  5'- aACCgCCGCGACCa---CGcCGAGUGGc -3'
miRNA:   3'- cUGG-GGCGCUGGcuuaGCcGCUCACC- -5'
11114 5' -58.4 NC_002794.1 + 43790 0.66 0.881007
Target:  5'- cGCCCCGCGuCCGAcccgccgcucCGggcccaggcucuccaGCGAGUGGc -3'
miRNA:   3'- cUGGGGCGCuGGCUua--------GC---------------CGCUCACC- -5'
11114 5' -58.4 NC_002794.1 + 127264 0.66 0.878306
Target:  5'- cGACCacgaCCGCGACgGucaCGGUGAcgGUGGa -3'
miRNA:   3'- -CUGG----GGCGCUGgCuuaGCCGCU--CACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.