Results 1 - 20 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 127264 | 0.66 | 0.878306 |
Target: 5'- cGACCacgaCCGCGACgGucaCGGUGAcgGUGGa -3' miRNA: 3'- -CUGG----GGCGCUGgCuuaGCCGCU--CACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 122305 | 0.66 | 0.89149 |
Target: 5'- aGugCCCGCuGGCCGucgcCGuGCGcGUGGc -3' miRNA: 3'- -CugGGGCG-CUGGCuua-GC-CGCuCACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 130294 | 0.66 | 0.89149 |
Target: 5'- cGCuCCCGgGuCCGGAaCGGCGAGa-- -3' miRNA: 3'- cUG-GGGCgCuGGCUUaGCCGCUCacc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 86991 | 0.66 | 0.89149 |
Target: 5'- -gUCCgGCGGCUu--UCGGCGGcGUGGg -3' miRNA: 3'- cuGGGgCGCUGGcuuAGCCGCU-CACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 134172 | 0.66 | 0.878306 |
Target: 5'- uGGCCgCGCGGauggccaccUCGuAUCGGCuGGUGGg -3' miRNA: 3'- -CUGGgGCGCU---------GGCuUAGCCGcUCACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 43790 | 0.66 | 0.881007 |
Target: 5'- cGCCCCGCGuCCGAcccgccgcucCGggcccaggcucuccaGCGAGUGGc -3' miRNA: 3'- cUGGGGCGCuGGCUua--------GC---------------CGCUCACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 185467 | 0.66 | 0.885 |
Target: 5'- aACgCCGCGGgCGGcggccgCGGCGAG-GGg -3' miRNA: 3'- cUGgGGCGCUgGCUua----GCCGCUCaCC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 79809 | 0.66 | 0.885 |
Target: 5'- aACCgCCGCGACCa---CGcCGAGUGGc -3' miRNA: 3'- cUGG-GGCGCUGGcuuaGCcGCUCACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 79430 | 0.66 | 0.885 |
Target: 5'- gGGCCCgGCGGCgGcggCGGCGAccGGc -3' miRNA: 3'- -CUGGGgCGCUGgCuuaGCCGCUcaCC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 89515 | 0.66 | 0.897774 |
Target: 5'- aGACCgCGUaGGCCaGAGUCGGCgGAGg-- -3' miRNA: 3'- -CUGGgGCG-CUGG-CUUAGCCG-CUCacc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 17983 | 0.66 | 0.897774 |
Target: 5'- uGGCgCCCaCGGCCGc--CGGCGAGUa- -3' miRNA: 3'- -CUG-GGGcGCUGGCuuaGCCGCUCAcc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 131714 | 0.66 | 0.897774 |
Target: 5'- gGACCCCgagaGCGAgCGAGcgGGCGAGa-- -3' miRNA: 3'- -CUGGGG----CGCUgGCUUagCCGCUCacc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 60465 | 0.66 | 0.903849 |
Target: 5'- cGCuCCCGCGACUGcauccgCGGCGAcacGGa -3' miRNA: 3'- cUG-GGGCGCUGGCuua---GCCGCUca-CC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 193742 | 0.66 | 0.903849 |
Target: 5'- --gCCCGCGGCU---UCGGCGAGcGa -3' miRNA: 3'- cugGGGCGCUGGcuuAGCCGCUCaCc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 53264 | 0.66 | 0.903849 |
Target: 5'- cGCCgCGCGACaaCGGggCGGCGAGcGa -3' miRNA: 3'- cUGGgGCGCUG--GCUuaGCCGCUCaCc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 139004 | 0.66 | 0.903849 |
Target: 5'- aGGCUuuGCGGCUGAAgagcucgccgCGGCGAaacUGGc -3' miRNA: 3'- -CUGGggCGCUGGCUUa---------GCCGCUc--ACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 96719 | 0.66 | 0.903849 |
Target: 5'- -uCCCC-CGGCCGAGcCGGCGAc--- -3' miRNA: 3'- cuGGGGcGCUGGCUUaGCCGCUcacc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 48556 | 0.66 | 0.903849 |
Target: 5'- cACUCCGcCGGCCGcccguccaGAUgGGCGAGccGGa -3' miRNA: 3'- cUGGGGC-GCUGGC--------UUAgCCGCUCa-CC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 12509 | 0.66 | 0.897774 |
Target: 5'- aGCCgCuCGACCGg--CGGCuGGGUGGa -3' miRNA: 3'- cUGGgGcGCUGGCuuaGCCG-CUCACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 151834 | 0.66 | 0.897774 |
Target: 5'- -cCCCCGaCG-CCGu-UCGGCGAGg-- -3' miRNA: 3'- cuGGGGC-GCuGGCuuAGCCGCUCacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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