miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11114 5' -58.4 NC_002794.1 + 139004 0.66 0.903849
Target:  5'- aGGCUuuGCGGCUGAAgagcucgccgCGGCGAaacUGGc -3'
miRNA:   3'- -CUGGggCGCUGGCUUa---------GCCGCUc--ACC- -5'
11114 5' -58.4 NC_002794.1 + 96719 0.66 0.903849
Target:  5'- -uCCCC-CGGCCGAGcCGGCGAc--- -3'
miRNA:   3'- cuGGGGcGCUGGCUUaGCCGCUcacc -5'
11114 5' -58.4 NC_002794.1 + 48556 0.66 0.903849
Target:  5'- cACUCCGcCGGCCGcccguccaGAUgGGCGAGccGGa -3'
miRNA:   3'- cUGGGGC-GCUGGC--------UUAgCCGCUCa-CC- -5'
11114 5' -58.4 NC_002794.1 + 12509 0.66 0.897774
Target:  5'- aGCCgCuCGACCGg--CGGCuGGGUGGa -3'
miRNA:   3'- cUGGgGcGCUGGCuuaGCCG-CUCACC- -5'
11114 5' -58.4 NC_002794.1 + 122305 0.66 0.89149
Target:  5'- aGugCCCGCuGGCCGucgcCGuGCGcGUGGc -3'
miRNA:   3'- -CugGGGCG-CUGGCuua-GC-CGCuCACC- -5'
11114 5' -58.4 NC_002794.1 + 89515 0.66 0.897774
Target:  5'- aGACCgCGUaGGCCaGAGUCGGCgGAGg-- -3'
miRNA:   3'- -CUGGgGCG-CUGG-CUUAGCCG-CUCacc -5'
11114 5' -58.4 NC_002794.1 + 17983 0.66 0.897774
Target:  5'- uGGCgCCCaCGGCCGc--CGGCGAGUa- -3'
miRNA:   3'- -CUG-GGGcGCUGGCuuaGCCGCUCAcc -5'
11114 5' -58.4 NC_002794.1 + 131714 0.66 0.897774
Target:  5'- gGACCCCgagaGCGAgCGAGcgGGCGAGa-- -3'
miRNA:   3'- -CUGGGG----CGCUgGCUUagCCGCUCacc -5'
11114 5' -58.4 NC_002794.1 + 151834 0.66 0.897774
Target:  5'- -cCCCCGaCG-CCGu-UCGGCGAGg-- -3'
miRNA:   3'- cuGGGGC-GCuGGCuuAGCCGCUCacc -5'
11114 5' -58.4 NC_002794.1 + 86920 0.67 0.841944
Target:  5'- uGACgCCCGUGGCgGGca-GGCGGGgcgGGa -3'
miRNA:   3'- -CUG-GGGCGCUGgCUuagCCGCUCa--CC- -5'
11114 5' -58.4 NC_002794.1 + 55351 0.67 0.841944
Target:  5'- cGCCCgagGCGGCCGAggCGGcCGAGgcGGc -3'
miRNA:   3'- cUGGGg--CGCUGGCUuaGCC-GCUCa-CC- -5'
11114 5' -58.4 NC_002794.1 + 121795 0.67 0.841944
Target:  5'- cGGCCaCCGCGACCGGc-CGGCGccUGc -3'
miRNA:   3'- -CUGG-GGCGCUGGCUuaGCCGCucACc -5'
11114 5' -58.4 NC_002794.1 + 64832 0.67 0.841944
Target:  5'- cGGCgCCGaCGACCGGA-CGGCGcGGcGGc -3'
miRNA:   3'- -CUGgGGC-GCUGGCUUaGCCGC-UCaCC- -5'
11114 5' -58.4 NC_002794.1 + 142125 0.67 0.848829
Target:  5'- cGACCCgGCGGCCGAccgccggGUcaCGGCgGAGgcGGc -3'
miRNA:   3'- -CUGGGgCGCUGGCU-------UA--GCCG-CUCa-CC- -5'
11114 5' -58.4 NC_002794.1 + 145866 0.67 0.841944
Target:  5'- cGCCgagggCCGCGACCGGAccgcgagaagCGGCGAGcgcgacgGGg -3'
miRNA:   3'- cUGG-----GGCGCUGGCUUa---------GCCGCUCa------CC- -5'
11114 5' -58.4 NC_002794.1 + 18570 0.67 0.849585
Target:  5'- cGugCCCGCGACCGucUCGaCGAc-GGa -3'
miRNA:   3'- -CugGGGCGCUGGCuuAGCcGCUcaCC- -5'
11114 5' -58.4 NC_002794.1 + 100560 0.67 0.849585
Target:  5'- -uCCCCGUGGCCGAG-CGGCa----- -3'
miRNA:   3'- cuGGGGCGCUGGCUUaGCCGcucacc -5'
11114 5' -58.4 NC_002794.1 + 179674 0.67 0.849585
Target:  5'- cGGCaCCCGCGGCggCGAcgguggcggCGGCGAcgGUGGc -3'
miRNA:   3'- -CUG-GGGCGCUG--GCUua-------GCCGCU--CACC- -5'
11114 5' -58.4 NC_002794.1 + 181422 0.67 0.864325
Target:  5'- cGCCauguCCGCGaaGCCG--UCGGCGAG-GGg -3'
miRNA:   3'- cUGG----GGCGC--UGGCuuAGCCGCUCaCC- -5'
11114 5' -58.4 NC_002794.1 + 141644 0.67 0.84117
Target:  5'- aGGCCggcguggCCGCGGCCGc--CGGCGGGUc- -3'
miRNA:   3'- -CUGG-------GGCGCUGGCuuaGCCGCUCAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.