miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11114 5' -58.4 NC_002794.1 + 179674 0.67 0.849585
Target:  5'- cGGCaCCCGCGGCggCGAcgguggcggCGGCGAcgGUGGc -3'
miRNA:   3'- -CUG-GGGCGCUG--GCUua-------GCCGCU--CACC- -5'
11114 5' -58.4 NC_002794.1 + 100560 0.67 0.849585
Target:  5'- -uCCCCGUGGCCGAG-CGGCa----- -3'
miRNA:   3'- cuGGGGCGCUGGCUUaGCCGcucacc -5'
11114 5' -58.4 NC_002794.1 + 18570 0.67 0.849585
Target:  5'- cGugCCCGCGACCGucUCGaCGAc-GGa -3'
miRNA:   3'- -CugGGGCGCUGGCuuAGCcGCUcaCC- -5'
11114 5' -58.4 NC_002794.1 + 145866 0.67 0.841944
Target:  5'- cGCCgagggCCGCGACCGGAccgcgagaagCGGCGAGcgcgacgGGg -3'
miRNA:   3'- cUGG-----GGCGCUGGCUUa---------GCCGCUCa------CC- -5'
11114 5' -58.4 NC_002794.1 + 142125 0.67 0.848829
Target:  5'- cGACCCgGCGGCCGAccgccggGUcaCGGCgGAGgcGGc -3'
miRNA:   3'- -CUGGGgCGCUGGCU-------UA--GCCG-CUCa-CC- -5'
11114 5' -58.4 NC_002794.1 + 10339 0.68 0.78398
Target:  5'- cGGCgCCGCGACCGggUgaCGGacugcuCGAcgGUGGa -3'
miRNA:   3'- -CUGgGGCGCUGGCuuA--GCC------GCU--CACC- -5'
11114 5' -58.4 NC_002794.1 + 107522 0.68 0.78398
Target:  5'- cGACgCCGaCGGCCGGcgCGGCGccGGcGGc -3'
miRNA:   3'- -CUGgGGC-GCUGGCUuaGCCGC--UCaCC- -5'
11114 5' -58.4 NC_002794.1 + 63916 0.68 0.78398
Target:  5'- cGCgCCGCGACCGccgcccggcCGGCGAGUc- -3'
miRNA:   3'- cUGgGGCGCUGGCuua------GCCGCUCAcc -5'
11114 5' -58.4 NC_002794.1 + 96979 0.68 0.792691
Target:  5'- uGCCUCGCGAgCGcGUCacgGGCaccGAGUGGg -3'
miRNA:   3'- cUGGGGCGCUgGCuUAG---CCG---CUCACC- -5'
11114 5' -58.4 NC_002794.1 + 116946 0.68 0.78398
Target:  5'- -uCCCCgGCGGCgGcGUCGGCGGGcgcaGGa -3'
miRNA:   3'- cuGGGG-CGCUGgCuUAGCCGCUCa---CC- -5'
11114 5' -58.4 NC_002794.1 + 32261 0.68 0.801271
Target:  5'- uGGCgCUCGaCGGCCGGccgAUCGGCGAGcGa -3'
miRNA:   3'- -CUG-GGGC-GCUGGCU---UAGCCGCUCaCc -5'
11114 5' -58.4 NC_002794.1 + 75369 0.68 0.801271
Target:  5'- cGACCCgcCGCGGCCGGcggCGGCGGc--- -3'
miRNA:   3'- -CUGGG--GCGCUGGCUua-GCCGCUcacc -5'
11114 5' -58.4 NC_002794.1 + 118673 0.68 0.801271
Target:  5'- cGACgCCCGCGGCCGccgcCGGCGGc--- -3'
miRNA:   3'- -CUG-GGGCGCUGGCuua-GCCGCUcacc -5'
11114 5' -58.4 NC_002794.1 + 145297 0.68 0.801271
Target:  5'- cGACCCCGCuGucguauuaaACCGGcgcgCGGCGGGcGGc -3'
miRNA:   3'- -CUGGGGCG-C---------UGGCUua--GCCGCUCaCC- -5'
11114 5' -58.4 NC_002794.1 + 151698 0.68 0.801271
Target:  5'- cGCCCCGcCGGCCGAgcgcgccaGUCGcGCGAa-GGa -3'
miRNA:   3'- cUGGGGC-GCUGGCU--------UAGC-CGCUcaCC- -5'
11114 5' -58.4 NC_002794.1 + 107046 0.68 0.801271
Target:  5'- -cCCCCGCGuCgGAggCGGCGGGcgcGGc -3'
miRNA:   3'- cuGGGGCGCuGgCUuaGCCGCUCa--CC- -5'
11114 5' -58.4 NC_002794.1 + 130004 0.69 0.774255
Target:  5'- cGGCCCCggaGCGugCGggUCGGCcucgcgcGAGg-- -3'
miRNA:   3'- -CUGGGG---CGCugGCuuAGCCG-------CUCacc -5'
11114 5' -58.4 NC_002794.1 + 147148 0.69 0.766194
Target:  5'- cGGCCCCGgGGCCGcGagGGCcAGcUGGa -3'
miRNA:   3'- -CUGGGGCgCUGGCuUagCCGcUC-ACC- -5'
11114 5' -58.4 NC_002794.1 + 143274 0.69 0.757134
Target:  5'- cGGCCCgGCG-CCGGccgcucgggGUCGGgCGGGUGc -3'
miRNA:   3'- -CUGGGgCGCuGGCU---------UAGCC-GCUCACc -5'
11114 5' -58.4 NC_002794.1 + 36922 0.69 0.757134
Target:  5'- cGGCCCCGCGACCG---CGGagGAGa-- -3'
miRNA:   3'- -CUGGGGCGCUGGCuuaGCCg-CUCacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.