Results 61 - 80 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 116359 | 0.69 | 0.747975 |
Target: 5'- cGGCCgCGCGGuCCGAccgGUCGGUGGcGUGcGg -3' miRNA: 3'- -CUGGgGCGCU-GGCU---UAGCCGCU-CAC-C- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 175758 | 0.69 | 0.757134 |
Target: 5'- gGACgCUaGUGACCGuuUCGGCggucgGAGUGGg -3' miRNA: 3'- -CUGgGG-CGCUGGCuuAGCCG-----CUCACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 36922 | 0.69 | 0.757134 |
Target: 5'- cGGCCCCGCGACCG---CGGagGAGa-- -3' miRNA: 3'- -CUGGGGCGCUGGCuuaGCCg-CUCacc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 143274 | 0.69 | 0.757134 |
Target: 5'- cGGCCCgGCG-CCGGccgcucgggGUCGGgCGGGUGc -3' miRNA: 3'- -CUGGGgCGCuGGCU---------UAGCC-GCUCACc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 147148 | 0.69 | 0.766194 |
Target: 5'- cGGCCCCGgGGCCGcGagGGCcAGcUGGa -3' miRNA: 3'- -CUGGGGCgCUGGCuUagCCGcUC-ACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 130004 | 0.69 | 0.774255 |
Target: 5'- cGGCCCCggaGCGugCGggUCGGCcucgcgcGAGg-- -3' miRNA: 3'- -CUGGGG---CGCugGCuuAGCCG-------CUCacc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 146989 | 0.69 | 0.766194 |
Target: 5'- cGGCgCCGcCGGCCGAcGUCGGCG-GcGGc -3' miRNA: 3'- -CUGgGGC-GCUGGCU-UAGCCGCuCaCC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 53778 | 0.7 | 0.710494 |
Target: 5'- gGACgCCCGCGACgCGcc-CGGCGGGUu- -3' miRNA: 3'- -CUG-GGGCGCUG-GCuuaGCCGCUCAcc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 81600 | 0.7 | 0.710494 |
Target: 5'- --aCCCGCGGCCGGAgucgCGGaCGAGc-- -3' miRNA: 3'- cugGGGCGCUGGCUUa---GCC-GCUCacc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 120767 | 0.7 | 0.700952 |
Target: 5'- uGGCCCUGCugcgacGCCGAuucgccUCGGCGAG-GGu -3' miRNA: 3'- -CUGGGGCGc-----UGGCUu-----AGCCGCUCaCC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 152423 | 0.7 | 0.700952 |
Target: 5'- uGCCCCG-GGCCGucuGUCGGC-AGcUGGg -3' miRNA: 3'- cUGGGGCgCUGGCu--UAGCCGcUC-ACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 111081 | 0.7 | 0.691359 |
Target: 5'- -cCCCCGuCGGCaGggUCGGCGGGcccggcgGGa -3' miRNA: 3'- cuGGGGC-GCUGgCuuAGCCGCUCa------CC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 141590 | 0.7 | 0.700952 |
Target: 5'- uGACgCCCGCGucGCCGGGcggcUCGGCGAccGGc -3' miRNA: 3'- -CUG-GGGCGC--UGGCUU----AGCCGCUcaCC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 129161 | 0.7 | 0.710494 |
Target: 5'- cGGCCCuCGCGGCCGAuggccguucgAUCGGCcuccGGGUc- -3' miRNA: 3'- -CUGGG-GCGCUGGCU----------UAGCCG----CUCAcc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 140894 | 0.7 | 0.710494 |
Target: 5'- uGACCCUGuCGACCGcg-UGGCGGGa-- -3' miRNA: 3'- -CUGGGGC-GCUGGCuuaGCCGCUCacc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 150528 | 0.7 | 0.710494 |
Target: 5'- cGGCCCCGUaGCCGGGcCGGCGccaUGGc -3' miRNA: 3'- -CUGGGGCGcUGGCUUaGCCGCuc-ACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 115028 | 0.7 | 0.710494 |
Target: 5'- cGCCCaccgucugcaggUGCGACCGGG-CGGCGGGcGGc -3' miRNA: 3'- cUGGG------------GCGCUGGCUUaGCCGCUCaCC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 12937 | 0.7 | 0.714294 |
Target: 5'- cGACCUgGCGgacuucguggcguugGCCGuGUCGGUGAcGUGGc -3' miRNA: 3'- -CUGGGgCGC---------------UGGCuUAGCCGCU-CACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 149690 | 0.7 | 0.719975 |
Target: 5'- cGACUggCCGCGgggGCCGcc-UGGCGGGUGGg -3' miRNA: 3'- -CUGG--GGCGC---UGGCuuaGCCGCUCACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 19365 | 0.7 | 0.68172 |
Target: 5'- cGCCCCGC--CCGGAUCGgGCGGGccGGu -3' miRNA: 3'- cUGGGGCGcuGGCUUAGC-CGCUCa-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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