Results 101 - 105 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 129204 | 0.75 | 0.437121 |
Target: 5'- cGACCgaGCGGCCGA--CGGCG-GUGGa -3' miRNA: 3'- -CUGGggCGCUGGCUuaGCCGCuCACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 148831 | 0.75 | 0.411843 |
Target: 5'- uGCCCCGCGACCGGgAUCGGaucuUGGg -3' miRNA: 3'- cUGGGGCGCUGGCU-UAGCCgcucACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 104490 | 0.76 | 0.371789 |
Target: 5'- cGGCCaCgGCGGCCGggUCGgGCGAGaacGGg -3' miRNA: 3'- -CUGG-GgCGCUGGCuuAGC-CGCUCa--CC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 61155 | 0.78 | 0.299971 |
Target: 5'- cGACCCCgagcgcGCGGuCCGGAUCGGCGGcUGGu -3' miRNA: 3'- -CUGGGG------CGCU-GGCUUAGCCGCUcACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 101582 | 0.82 | 0.176214 |
Target: 5'- cGGCCgCCGCGGCCGGGggGGCGGGUGc -3' miRNA: 3'- -CUGG-GGCGCUGGCUUagCCGCUCACc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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