miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11114 5' -58.4 NC_002794.1 + 101582 0.82 0.176214
Target:  5'- cGGCCgCCGCGGCCGGGggGGCGGGUGc -3'
miRNA:   3'- -CUGG-GGCGCUGGCUUagCCGCUCACc -5'
11114 5' -58.4 NC_002794.1 + 61155 0.78 0.299971
Target:  5'- cGACCCCgagcgcGCGGuCCGGAUCGGCGGcUGGu -3'
miRNA:   3'- -CUGGGG------CGCU-GGCUUAGCCGCUcACC- -5'
11114 5' -58.4 NC_002794.1 + 104490 0.76 0.371789
Target:  5'- cGGCCaCgGCGGCCGggUCGgGCGAGaacGGg -3'
miRNA:   3'- -CUGG-GgCGCUGGCuuAGC-CGCUCa--CC- -5'
11114 5' -58.4 NC_002794.1 + 129204 0.75 0.437121
Target:  5'- cGACCgaGCGGCCGA--CGGCG-GUGGa -3'
miRNA:   3'- -CUGGggCGCUGGCUuaGCCGCuCACC- -5'
11114 5' -58.4 NC_002794.1 + 148831 0.75 0.411843
Target:  5'- uGCCCCGCGACCGGgAUCGGaucuUGGg -3'
miRNA:   3'- cUGGGGCGCUGGCU-UAGCCgcucACC- -5'
11114 5' -58.4 NC_002794.1 + 115123 0.74 0.481147
Target:  5'- cGACCCU-CGuCUGggUCGGuCGGGUGGa -3'
miRNA:   3'- -CUGGGGcGCuGGCuuAGCC-GCUCACC- -5'
11114 5' -58.4 NC_002794.1 + 26645 0.74 0.463268
Target:  5'- cACCCggacgGCGGCCGGcucGUCGGCGgGGUGGa -3'
miRNA:   3'- cUGGGg----CGCUGGCU---UAGCCGC-UCACC- -5'
11114 5' -58.4 NC_002794.1 + 127905 0.74 0.472165
Target:  5'- uGACCCUGUgaGACCGAGggGGCGGGgauucgGGg -3'
miRNA:   3'- -CUGGGGCG--CUGGCUUagCCGCUCa-----CC- -5'
11114 5' -58.4 NC_002794.1 + 105811 0.73 0.508572
Target:  5'- gGACCgaaagCGCGACCGggUCGGuCGAGcgagcgGGa -3'
miRNA:   3'- -CUGGg----GCGCUGGCuuAGCC-GCUCa-----CC- -5'
11114 5' -58.4 NC_002794.1 + 156406 0.73 0.534747
Target:  5'- cGGCgCCGCGGCCGcggccacggcCGGCGGGUGa -3'
miRNA:   3'- -CUGgGGCGCUGGCuua-------GCCGCUCACc -5'
11114 5' -58.4 NC_002794.1 + 18800 0.73 0.508572
Target:  5'- cGGCCCCGcCGGCCaacGggUCGGCGAc--- -3'
miRNA:   3'- -CUGGGGC-GCUGG---CuuAGCCGCUcacc -5'
11114 5' -58.4 NC_002794.1 + 150801 0.73 0.546112
Target:  5'- aGGCCCCGCGGCgGA--CGGcCGAGccgcUGGa -3'
miRNA:   3'- -CUGGGGCGCUGgCUuaGCC-GCUC----ACC- -5'
11114 5' -58.4 NC_002794.1 + 138750 0.72 0.584493
Target:  5'- cGGCCCUccgGgGGCCGAGUcgCGGCGgucGGUGGa -3'
miRNA:   3'- -CUGGGG---CgCUGGCUUA--GCCGC---UCACC- -5'
11114 5' -58.4 NC_002794.1 + 89045 0.72 0.555641
Target:  5'- -cUCCCGCGAcgaaucCCGGAUCGacGCGAGUGa -3'
miRNA:   3'- cuGGGGCGCU------GGCUUAGC--CGCUCACc -5'
11114 5' -58.4 NC_002794.1 + 11876 0.72 0.603894
Target:  5'- cGCCCCGCGACgGGuccUCGaGCGGGUu- -3'
miRNA:   3'- cUGGGGCGCUGgCUu--AGC-CGCUCAcc -5'
11114 5' -58.4 NC_002794.1 + 108431 0.72 0.565218
Target:  5'- cACCCCGCGACCGGcggcacucgCGGCG-GcGGc -3'
miRNA:   3'- cUGGGGCGCUGGCUua-------GCCGCuCaCC- -5'
11114 5' -58.4 NC_002794.1 + 120063 0.72 0.555641
Target:  5'- cGGCCgCGgaGGCCGAcgCGGCG-GUGGc -3'
miRNA:   3'- -CUGGgGCg-CUGGCUuaGCCGCuCACC- -5'
11114 5' -58.4 NC_002794.1 + 44285 0.72 0.594181
Target:  5'- gGAgUCCGCGcccGCCGGGcCGGCGAGgcgGGg -3'
miRNA:   3'- -CUgGGGCGC---UGGCUUaGCCGCUCa--CC- -5'
11114 5' -58.4 NC_002794.1 + 21892 0.72 0.555641
Target:  5'- gGugUCCGCGGCCuGcGUCGGUG-GUGGc -3'
miRNA:   3'- -CugGGGCGCUGG-CuUAGCCGCuCACC- -5'
11114 5' -58.4 NC_002794.1 + 42567 0.71 0.662339
Target:  5'- cGACCCCGCGGCgGAcccgCGGacgGAGgagGGc -3'
miRNA:   3'- -CUGGGGCGCUGgCUua--GCCg--CUCa--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.