miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11114 5' -58.4 NC_002794.1 + 32830 0.71 0.64287
Target:  5'- cGGCCUCGCGGCCGGcucAUCGGU-AGcGGc -3'
miRNA:   3'- -CUGGGGCGCUGGCU---UAGCCGcUCaCC- -5'
11114 5' -58.4 NC_002794.1 + 126671 0.71 0.613625
Target:  5'- gGGCCgCgGCGAgggcCCGAAUCGGgGAGggagGGg -3'
miRNA:   3'- -CUGG-GgCGCU----GGCUUAGCCgCUCa---CC- -5'
11114 5' -58.4 NC_002794.1 + 42567 0.71 0.662339
Target:  5'- cGACCCCGCGGCgGAcccgCGGacgGAGgagGGc -3'
miRNA:   3'- -CUGGGGCGCUGgCUua--GCCg--CUCa--CC- -5'
11114 5' -58.4 NC_002794.1 + 86828 0.71 0.652612
Target:  5'- cGACCUCGCcggGAUCGggUCGGCGGc--- -3'
miRNA:   3'- -CUGGGGCG---CUGGCuuAGCCGCUcacc -5'
11114 5' -58.4 NC_002794.1 + 19365 0.7 0.68172
Target:  5'- cGCCCCGC--CCGGAUCGgGCGGGccGGu -3'
miRNA:   3'- cUGGGGCGcuGGCUUAGC-CGCUCa-CC- -5'
11114 5' -58.4 NC_002794.1 + 24184 0.7 0.672044
Target:  5'- cGACCCCGCggcaccgaGACCGAGcgCGGCGGc--- -3'
miRNA:   3'- -CUGGGGCG--------CUGGCUUa-GCCGCUcacc -5'
11114 5' -58.4 NC_002794.1 + 152423 0.7 0.700952
Target:  5'- uGCCCCG-GGCCGucuGUCGGC-AGcUGGg -3'
miRNA:   3'- cUGGGGCgCUGGCu--UAGCCGcUC-ACC- -5'
11114 5' -58.4 NC_002794.1 + 81600 0.7 0.710494
Target:  5'- --aCCCGCGGCCGGAgucgCGGaCGAGc-- -3'
miRNA:   3'- cugGGGCGCUGGCUUa---GCC-GCUCacc -5'
11114 5' -58.4 NC_002794.1 + 53778 0.7 0.710494
Target:  5'- gGACgCCCGCGACgCGcc-CGGCGGGUu- -3'
miRNA:   3'- -CUG-GGGCGCUG-GCuuaGCCGCUCAcc -5'
11114 5' -58.4 NC_002794.1 + 150528 0.7 0.710494
Target:  5'- cGGCCCCGUaGCCGGGcCGGCGccaUGGc -3'
miRNA:   3'- -CUGGGGCGcUGGCUUaGCCGCuc-ACC- -5'
11114 5' -58.4 NC_002794.1 + 120767 0.7 0.700952
Target:  5'- uGGCCCUGCugcgacGCCGAuucgccUCGGCGAG-GGu -3'
miRNA:   3'- -CUGGGGCGc-----UGGCUu-----AGCCGCUCaCC- -5'
11114 5' -58.4 NC_002794.1 + 129161 0.7 0.710494
Target:  5'- cGGCCCuCGCGGCCGAuggccguucgAUCGGCcuccGGGUc- -3'
miRNA:   3'- -CUGGG-GCGCUGGCU----------UAGCCG----CUCAcc -5'
11114 5' -58.4 NC_002794.1 + 115028 0.7 0.710494
Target:  5'- cGCCCaccgucugcaggUGCGACCGGG-CGGCGGGcGGc -3'
miRNA:   3'- cUGGG------------GCGCUGGCUUaGCCGCUCaCC- -5'
11114 5' -58.4 NC_002794.1 + 140894 0.7 0.710494
Target:  5'- uGACCCUGuCGACCGcg-UGGCGGGa-- -3'
miRNA:   3'- -CUGGGGC-GCUGGCuuaGCCGCUCacc -5'
11114 5' -58.4 NC_002794.1 + 141590 0.7 0.700952
Target:  5'- uGACgCCCGCGucGCCGGGcggcUCGGCGAccGGc -3'
miRNA:   3'- -CUG-GGGCGC--UGGCUU----AGCCGCUcaCC- -5'
11114 5' -58.4 NC_002794.1 + 149690 0.7 0.719975
Target:  5'- cGACUggCCGCGgggGCCGcc-UGGCGGGUGGg -3'
miRNA:   3'- -CUGG--GGCGC---UGGCuuaGCCGCUCACC- -5'
11114 5' -58.4 NC_002794.1 + 12937 0.7 0.714294
Target:  5'- cGACCUgGCGgacuucguggcguugGCCGuGUCGGUGAcGUGGc -3'
miRNA:   3'- -CUGGGgCGC---------------UGGCuUAGCCGCU-CACC- -5'
11114 5' -58.4 NC_002794.1 + 111081 0.7 0.691359
Target:  5'- -cCCCCGuCGGCaGggUCGGCGGGcccggcgGGa -3'
miRNA:   3'- cuGGGGC-GCUGgCuuAGCCGCUCa------CC- -5'
11114 5' -58.4 NC_002794.1 + 106971 0.69 0.738723
Target:  5'- cGCCUCGCGcggcgGCCGGcaCGGCG-GUGGc -3'
miRNA:   3'- cUGGGGCGC-----UGGCUuaGCCGCuCACC- -5'
11114 5' -58.4 NC_002794.1 + 71797 0.69 0.738723
Target:  5'- cGCCCCcCGGCgGGcgCGGCGAGg-- -3'
miRNA:   3'- cUGGGGcGCUGgCUuaGCCGCUCacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.