Results 101 - 105 of 105 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 11114 | 5' | -58.4 | NC_002794.1 | + | 79430 | 0.66 | 0.885 |
|
Target: 5'- gGGCCCgGCGGCgGcggCGGCGAccGGc -3' miRNA: 3'- -CUGGGgCGCUGgCuuaGCCGCUcaCC- -5' |
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| 11114 | 5' | -58.4 | NC_002794.1 | + | 79809 | 0.66 | 0.885 |
|
Target: 5'- aACCgCCGCGACCa---CGcCGAGUGGc -3' miRNA: 3'- cUGG-GGCGCUGGcuuaGCcGCUCACC- -5' |
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| 11114 | 5' | -58.4 | NC_002794.1 | + | 185467 | 0.66 | 0.885 |
|
Target: 5'- aACgCCGCGGgCGGcggccgCGGCGAG-GGg -3' miRNA: 3'- cUGgGGCGCUgGCUua----GCCGCUCaCC- -5' |
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| 11114 | 5' | -58.4 | NC_002794.1 | + | 43790 | 0.66 | 0.881007 |
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Target: 5'- cGCCCCGCGuCCGAcccgccgcucCGggcccaggcucuccaGCGAGUGGc -3' miRNA: 3'- cUGGGGCGCuGGCUua--------GC---------------CGCUCACC- -5' |
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| 11114 | 5' | -58.4 | NC_002794.1 | + | 34776 | 0.66 | 0.871413 |
|
Target: 5'- cGGCcgCCCGCGccaGCCGAGUCGGcCGAa--- -3' miRNA: 3'- -CUG--GGGCGC---UGGCUUAGCC-GCUcacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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