Results 1 - 20 of 105 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 101582 | 0.82 | 0.176214 |
Target: 5'- cGGCCgCCGCGGCCGGGggGGCGGGUGc -3' miRNA: 3'- -CUGG-GGCGCUGGCUUagCCGCUCACc -5' |
|||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 61155 | 0.78 | 0.299971 |
Target: 5'- cGACCCCgagcgcGCGGuCCGGAUCGGCGGcUGGu -3' miRNA: 3'- -CUGGGG------CGCU-GGCUUAGCCGCUcACC- -5' |
|||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 104490 | 0.76 | 0.371789 |
Target: 5'- cGGCCaCgGCGGCCGggUCGgGCGAGaacGGg -3' miRNA: 3'- -CUGG-GgCGCUGGCuuAGC-CGCUCa--CC- -5' |
|||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 148831 | 0.75 | 0.411843 |
Target: 5'- uGCCCCGCGACCGGgAUCGGaucuUGGg -3' miRNA: 3'- cUGGGGCGCUGGCU-UAGCCgcucACC- -5' |
|||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 129204 | 0.75 | 0.437121 |
Target: 5'- cGACCgaGCGGCCGA--CGGCG-GUGGa -3' miRNA: 3'- -CUGGggCGCUGGCUuaGCCGCuCACC- -5' |
|||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 26645 | 0.74 | 0.463268 |
Target: 5'- cACCCggacgGCGGCCGGcucGUCGGCGgGGUGGa -3' miRNA: 3'- cUGGGg----CGCUGGCU---UAGCCGC-UCACC- -5' |
|||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 127905 | 0.74 | 0.472165 |
Target: 5'- uGACCCUGUgaGACCGAGggGGCGGGgauucgGGg -3' miRNA: 3'- -CUGGGGCG--CUGGCUUagCCGCUCa-----CC- -5' |
|||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 115123 | 0.74 | 0.481147 |
Target: 5'- cGACCCU-CGuCUGggUCGGuCGGGUGGa -3' miRNA: 3'- -CUGGGGcGCuGGCuuAGCC-GCUCACC- -5' |
|||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 105811 | 0.73 | 0.508572 |
Target: 5'- gGACCgaaagCGCGACCGggUCGGuCGAGcgagcgGGa -3' miRNA: 3'- -CUGGg----GCGCUGGCuuAGCC-GCUCa-----CC- -5' |
|||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 18800 | 0.73 | 0.508572 |
Target: 5'- cGGCCCCGcCGGCCaacGggUCGGCGAc--- -3' miRNA: 3'- -CUGGGGC-GCUGG---CuuAGCCGCUcacc -5' |
|||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 156406 | 0.73 | 0.534747 |
Target: 5'- cGGCgCCGCGGCCGcggccacggcCGGCGGGUGa -3' miRNA: 3'- -CUGgGGCGCUGGCuua-------GCCGCUCACc -5' |
|||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 150801 | 0.73 | 0.546112 |
Target: 5'- aGGCCCCGCGGCgGA--CGGcCGAGccgcUGGa -3' miRNA: 3'- -CUGGGGCGCUGgCUuaGCC-GCUC----ACC- -5' |
|||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 89045 | 0.72 | 0.555641 |
Target: 5'- -cUCCCGCGAcgaaucCCGGAUCGacGCGAGUGa -3' miRNA: 3'- cuGGGGCGCU------GGCUUAGC--CGCUCACc -5' |
|||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 21892 | 0.72 | 0.555641 |
Target: 5'- gGugUCCGCGGCCuGcGUCGGUG-GUGGc -3' miRNA: 3'- -CugGGGCGCUGG-CuUAGCCGCuCACC- -5' |
|||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 120063 | 0.72 | 0.555641 |
Target: 5'- cGGCCgCGgaGGCCGAcgCGGCG-GUGGc -3' miRNA: 3'- -CUGGgGCg-CUGGCUuaGCCGCuCACC- -5' |
|||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 108431 | 0.72 | 0.565218 |
Target: 5'- cACCCCGCGACCGGcggcacucgCGGCG-GcGGc -3' miRNA: 3'- cUGGGGCGCUGGCUua-------GCCGCuCaCC- -5' |
|||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 138750 | 0.72 | 0.584493 |
Target: 5'- cGGCCCUccgGgGGCCGAGUcgCGGCGgucGGUGGa -3' miRNA: 3'- -CUGGGG---CgCUGGCUUA--GCCGC---UCACC- -5' |
|||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 44285 | 0.72 | 0.594181 |
Target: 5'- gGAgUCCGCGcccGCCGGGcCGGCGAGgcgGGg -3' miRNA: 3'- -CUgGGGCGC---UGGCUUaGCCGCUCa--CC- -5' |
|||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 11876 | 0.72 | 0.603894 |
Target: 5'- cGCCCCGCGACgGGuccUCGaGCGGGUu- -3' miRNA: 3'- cUGGGGCGCUGgCUu--AGC-CGCUCAcc -5' |
|||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 126671 | 0.71 | 0.613625 |
Target: 5'- gGGCCgCgGCGAgggcCCGAAUCGGgGAGggagGGg -3' miRNA: 3'- -CUGG-GgCGCU----GGCUUAGCCgCUCa---CC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home