Results 41 - 60 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 141644 | 0.67 | 0.84117 |
Target: 5'- aGGCCggcguggCCGCGGCCGc--CGGCGGGUc- -3' miRNA: 3'- -CUGG-------GGCGCUGGCuuaGCCGCUCAcc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 90391 | 0.67 | 0.833338 |
Target: 5'- cGCCguCCGCGAUCGGgcugcacgugagcAUCGGCcgucccGAGUGGc -3' miRNA: 3'- cUGG--GGCGCUGGCU-------------UAGCCG------CUCACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 177896 | 0.67 | 0.826148 |
Target: 5'- aGACCgCGCGGUCGGuuuAUCGGgGAGgagGGu -3' miRNA: 3'- -CUGGgGCGCUGGCU---UAGCCgCUCa--CC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 66723 | 0.67 | 0.826148 |
Target: 5'- cGGCCgCCGCcACCGc--CGGCG-GUGGc -3' miRNA: 3'- -CUGG-GGCGcUGGCuuaGCCGCuCACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 95827 | 0.67 | 0.825341 |
Target: 5'- cGGCCgggggagcggcggCgGCGGCCGGGgaggCGGCGGGcGGg -3' miRNA: 3'- -CUGG-------------GgCGCUGGCUUa---GCCGCUCaCC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 32261 | 0.68 | 0.801271 |
Target: 5'- uGGCgCUCGaCGGCCGGccgAUCGGCGAGcGa -3' miRNA: 3'- -CUG-GGGC-GCUGGCU---UAGCCGCUCaCc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 75369 | 0.68 | 0.801271 |
Target: 5'- cGACCCgcCGCGGCCGGcggCGGCGGc--- -3' miRNA: 3'- -CUGGG--GCGCUGGCUua-GCCGCUcacc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 107046 | 0.68 | 0.801271 |
Target: 5'- -cCCCCGCGuCgGAggCGGCGGGcgcGGc -3' miRNA: 3'- cuGGGGCGCuGgCUuaGCCGCUCa--CC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 151698 | 0.68 | 0.801271 |
Target: 5'- cGCCCCGcCGGCCGAgcgcgccaGUCGcGCGAa-GGa -3' miRNA: 3'- cUGGGGC-GCUGGCU--------UAGC-CGCUcaCC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 145297 | 0.68 | 0.801271 |
Target: 5'- cGACCCCGCuGucguauuaaACCGGcgcgCGGCGGGcGGc -3' miRNA: 3'- -CUGGGGCG-C---------UGGCUua--GCCGCUCaCC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 118673 | 0.68 | 0.801271 |
Target: 5'- cGACgCCCGCGGCCGccgcCGGCGGc--- -3' miRNA: 3'- -CUG-GGGCGCUGGCuua-GCCGCUcacc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 96979 | 0.68 | 0.792691 |
Target: 5'- uGCCUCGCGAgCGcGUCacgGGCaccGAGUGGg -3' miRNA: 3'- cUGGGGCGCUgGCuUAG---CCG---CUCACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 10339 | 0.68 | 0.78398 |
Target: 5'- cGGCgCCGCGACCGggUgaCGGacugcuCGAcgGUGGa -3' miRNA: 3'- -CUGgGGCGCUGGCuuA--GCC------GCU--CACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 107522 | 0.68 | 0.78398 |
Target: 5'- cGACgCCGaCGGCCGGcgCGGCGccGGcGGc -3' miRNA: 3'- -CUGgGGC-GCUGGCUuaGCCGC--UCaCC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 63916 | 0.68 | 0.78398 |
Target: 5'- cGCgCCGCGACCGccgcccggcCGGCGAGUc- -3' miRNA: 3'- cUGgGGCGCUGGCuua------GCCGCUCAcc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 116946 | 0.68 | 0.78398 |
Target: 5'- -uCCCCgGCGGCgGcGUCGGCGGGcgcaGGa -3' miRNA: 3'- cuGGGG-CGCUGgCuUAGCCGCUCa---CC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 130004 | 0.69 | 0.774255 |
Target: 5'- cGGCCCCggaGCGugCGggUCGGCcucgcgcGAGg-- -3' miRNA: 3'- -CUGGGG---CGCugGCuuAGCCG-------CUCacc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 146989 | 0.69 | 0.766194 |
Target: 5'- cGGCgCCGcCGGCCGAcGUCGGCG-GcGGc -3' miRNA: 3'- -CUGgGGC-GCUGGCU-UAGCCGCuCaCC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 147148 | 0.69 | 0.766194 |
Target: 5'- cGGCCCCGgGGCCGcGagGGCcAGcUGGa -3' miRNA: 3'- -CUGGGGCgCUGGCuUagCCGcUC-ACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 36922 | 0.69 | 0.757134 |
Target: 5'- cGGCCCCGCGACCG---CGGagGAGa-- -3' miRNA: 3'- -CUGGGGCGCUGGCuuaGCCg-CUCacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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