miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11114 5' -58.4 NC_002794.1 + 10339 0.68 0.78398
Target:  5'- cGGCgCCGCGACCGggUgaCGGacugcuCGAcgGUGGa -3'
miRNA:   3'- -CUGgGGCGCUGGCuuA--GCC------GCU--CACC- -5'
11114 5' -58.4 NC_002794.1 + 11876 0.72 0.603894
Target:  5'- cGCCCCGCGACgGGuccUCGaGCGGGUu- -3'
miRNA:   3'- cUGGGGCGCUGgCUu--AGC-CGCUCAcc -5'
11114 5' -58.4 NC_002794.1 + 12509 0.66 0.897774
Target:  5'- aGCCgCuCGACCGg--CGGCuGGGUGGa -3'
miRNA:   3'- cUGGgGcGCUGGCuuaGCCG-CUCACC- -5'
11114 5' -58.4 NC_002794.1 + 12937 0.7 0.714294
Target:  5'- cGACCUgGCGgacuucguggcguugGCCGuGUCGGUGAcGUGGc -3'
miRNA:   3'- -CUGGGgCGC---------------UGGCuUAGCCGCU-CACC- -5'
11114 5' -58.4 NC_002794.1 + 13315 0.69 0.754397
Target:  5'- cGCCCgGCGAgCGAcgaccgcucccccgGUCGG-GGGUGGc -3'
miRNA:   3'- cUGGGgCGCUgGCU--------------UAGCCgCUCACC- -5'
11114 5' -58.4 NC_002794.1 + 17983 0.66 0.897774
Target:  5'- uGGCgCCCaCGGCCGc--CGGCGAGUa- -3'
miRNA:   3'- -CUG-GGGcGCUGGCuuaGCCGCUCAcc -5'
11114 5' -58.4 NC_002794.1 + 18570 0.67 0.849585
Target:  5'- cGugCCCGCGACCGucUCGaCGAc-GGa -3'
miRNA:   3'- -CugGGGCGCUGGCuuAGCcGCUcaCC- -5'
11114 5' -58.4 NC_002794.1 + 18800 0.73 0.508572
Target:  5'- cGGCCCCGcCGGCCaacGggUCGGCGAc--- -3'
miRNA:   3'- -CUGGGGC-GCUGG---CuuAGCCGCUcacc -5'
11114 5' -58.4 NC_002794.1 + 19365 0.7 0.68172
Target:  5'- cGCCCCGC--CCGGAUCGgGCGGGccGGu -3'
miRNA:   3'- cUGGGGCGcuGGCUUAGC-CGCUCa-CC- -5'
11114 5' -58.4 NC_002794.1 + 21892 0.72 0.555641
Target:  5'- gGugUCCGCGGCCuGcGUCGGUG-GUGGc -3'
miRNA:   3'- -CugGGGCGCUGG-CuUAGCCGCuCACC- -5'
11114 5' -58.4 NC_002794.1 + 24184 0.7 0.672044
Target:  5'- cGACCCCGCggcaccgaGACCGAGcgCGGCGGc--- -3'
miRNA:   3'- -CUGGGGCG--------CUGGCUUa-GCCGCUcacc -5'
11114 5' -58.4 NC_002794.1 + 26645 0.74 0.463268
Target:  5'- cACCCggacgGCGGCCGGcucGUCGGCGgGGUGGa -3'
miRNA:   3'- cUGGGg----CGCUGGCU---UAGCCGC-UCACC- -5'
11114 5' -58.4 NC_002794.1 + 32261 0.68 0.801271
Target:  5'- uGGCgCUCGaCGGCCGGccgAUCGGCGAGcGa -3'
miRNA:   3'- -CUG-GGGC-GCUGGCU---UAGCCGCUCaCc -5'
11114 5' -58.4 NC_002794.1 + 32830 0.71 0.64287
Target:  5'- cGGCCUCGCGGCCGGcucAUCGGU-AGcGGc -3'
miRNA:   3'- -CUGGGGCGCUGGCU---UAGCCGcUCaCC- -5'
11114 5' -58.4 NC_002794.1 + 34776 0.66 0.871413
Target:  5'- cGGCcgCCCGCGccaGCCGAGUCGGcCGAa--- -3'
miRNA:   3'- -CUG--GGGCGC---UGGCUUAGCC-GCUcacc -5'
11114 5' -58.4 NC_002794.1 + 36922 0.69 0.757134
Target:  5'- cGGCCCCGCGACCG---CGGagGAGa-- -3'
miRNA:   3'- -CUGGGGCGCUGGCuuaGCCg-CUCacc -5'
11114 5' -58.4 NC_002794.1 + 37931 0.69 0.733131
Target:  5'- aACCgCCGCGGCCGcccgugccUCGGCGAcucgcucggcggcucGUGGu -3'
miRNA:   3'- cUGG-GGCGCUGGCuu------AGCCGCU---------------CACC- -5'
11114 5' -58.4 NC_002794.1 + 42567 0.71 0.662339
Target:  5'- cGACCCCGCGGCgGAcccgCGGacgGAGgagGGc -3'
miRNA:   3'- -CUGGGGCGCUGgCUua--GCCg--CUCa--CC- -5'
11114 5' -58.4 NC_002794.1 + 43790 0.66 0.881007
Target:  5'- cGCCCCGCGuCCGAcccgccgcucCGggcccaggcucuccaGCGAGUGGc -3'
miRNA:   3'- cUGGGGCGCuGGCUua--------GC---------------CGCUCACC- -5'
11114 5' -58.4 NC_002794.1 + 44285 0.72 0.594181
Target:  5'- gGAgUCCGCGcccGCCGGGcCGGCGAGgcgGGg -3'
miRNA:   3'- -CUgGGGCGC---UGGCUUaGCCGCUCa--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.