Results 21 - 40 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 48556 | 0.66 | 0.903849 |
Target: 5'- cACUCCGcCGGCCGcccguccaGAUgGGCGAGccGGa -3' miRNA: 3'- cUGGGGC-GCUGGC--------UUAgCCGCUCa-CC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 53264 | 0.66 | 0.903849 |
Target: 5'- cGCCgCGCGACaaCGGggCGGCGAGcGa -3' miRNA: 3'- cUGGgGCGCUG--GCUuaGCCGCUCaCc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 53778 | 0.7 | 0.710494 |
Target: 5'- gGACgCCCGCGACgCGcc-CGGCGGGUu- -3' miRNA: 3'- -CUG-GGGCGCUG-GCuuaGCCGCUCAcc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 55351 | 0.67 | 0.841944 |
Target: 5'- cGCCCgagGCGGCCGAggCGGcCGAGgcGGc -3' miRNA: 3'- cUGGGg--CGCUGGCUuaGCC-GCUCa-CC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 59187 | 0.66 | 0.877625 |
Target: 5'- gGACCCCGUGGCgguCGAcgcgcacGUCGGCGucucGGc -3' miRNA: 3'- -CUGGGGCGCUG---GCU-------UAGCCGCuca-CC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 60465 | 0.66 | 0.903849 |
Target: 5'- cGCuCCCGCGACUGcauccgCGGCGAcacGGa -3' miRNA: 3'- cUG-GGGCGCUGGCuua---GCCGCUca-CC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 61155 | 0.78 | 0.299971 |
Target: 5'- cGACCCCgagcgcGCGGuCCGGAUCGGCGGcUGGu -3' miRNA: 3'- -CUGGGG------CGCU-GGCUUAGCCGCUcACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 63916 | 0.68 | 0.78398 |
Target: 5'- cGCgCCGCGACCGccgcccggcCGGCGAGUc- -3' miRNA: 3'- cUGgGGCGCUGGCuua------GCCGCUCAcc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 64832 | 0.67 | 0.841944 |
Target: 5'- cGGCgCCGaCGACCGGA-CGGCGcGGcGGc -3' miRNA: 3'- -CUGgGGC-GCUGGCUUaGCCGC-UCaCC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 66723 | 0.67 | 0.826148 |
Target: 5'- cGGCCgCCGCcACCGc--CGGCG-GUGGc -3' miRNA: 3'- -CUGG-GGCGcUGGCuuaGCCGCuCACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 71797 | 0.69 | 0.738723 |
Target: 5'- cGCCCCcCGGCgGGcgCGGCGAGg-- -3' miRNA: 3'- cUGGGGcGCUGgCUuaGCCGCUCacc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 72457 | 0.66 | 0.871413 |
Target: 5'- cGCCCCGCGcCCGGccccgCGGCGGc--- -3' miRNA: 3'- cUGGGGCGCuGGCUua---GCCGCUcacc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 75369 | 0.68 | 0.801271 |
Target: 5'- cGACCCgcCGCGGCCGGcggCGGCGGc--- -3' miRNA: 3'- -CUGGG--GCGCUGGCUua-GCCGCUcacc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 79430 | 0.66 | 0.885 |
Target: 5'- gGGCCCgGCGGCgGcggCGGCGAccGGc -3' miRNA: 3'- -CUGGGgCGCUGgCuuaGCCGCUcaCC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 79809 | 0.66 | 0.885 |
Target: 5'- aACCgCCGCGACCa---CGcCGAGUGGc -3' miRNA: 3'- cUGG-GGCGCUGGcuuaGCcGCUCACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 81600 | 0.7 | 0.710494 |
Target: 5'- --aCCCGCGGCCGGAgucgCGGaCGAGc-- -3' miRNA: 3'- cugGGGCGCUGGCUUa---GCC-GCUCacc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 86828 | 0.71 | 0.652612 |
Target: 5'- cGACCUCGCcggGAUCGggUCGGCGGc--- -3' miRNA: 3'- -CUGGGGCG---CUGGCuuAGCCGCUcacc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 86920 | 0.67 | 0.841944 |
Target: 5'- uGACgCCCGUGGCgGGca-GGCGGGgcgGGa -3' miRNA: 3'- -CUG-GGGCGCUGgCUuagCCGCUCa--CC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 86991 | 0.66 | 0.89149 |
Target: 5'- -gUCCgGCGGCUu--UCGGCGGcGUGGg -3' miRNA: 3'- cuGGGgCGCUGGcuuAGCCGCU-CACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 89045 | 0.72 | 0.555641 |
Target: 5'- -cUCCCGCGAcgaaucCCGGAUCGacGCGAGUGa -3' miRNA: 3'- cuGGGGCGCU------GGCUUAGC--CGCUCACc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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