miRNA display CGI


Results 61 - 80 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11114 5' -58.4 NC_002794.1 + 117462 0.66 0.871413
Target:  5'- aGACgCCGCGGUCG--UCGGCGuacucGUGGa -3'
miRNA:   3'- -CUGgGGCGCUGGCuuAGCCGCu----CACC- -5'
11114 5' -58.4 NC_002794.1 + 118215 0.66 0.876259
Target:  5'- cGCCUCGCGGacggccacgcagcuCUGGaggauGUCGGCGGGcUGGa -3'
miRNA:   3'- cUGGGGCGCU--------------GGCU-----UAGCCGCUC-ACC- -5'
11114 5' -58.4 NC_002794.1 + 118673 0.68 0.801271
Target:  5'- cGACgCCCGCGGCCGccgcCGGCGGc--- -3'
miRNA:   3'- -CUG-GGGCGCUGGCuua-GCCGCUcacc -5'
11114 5' -58.4 NC_002794.1 + 120063 0.72 0.555641
Target:  5'- cGGCCgCGgaGGCCGAcgCGGCG-GUGGc -3'
miRNA:   3'- -CUGGgGCg-CUGGCUuaGCCGCuCACC- -5'
11114 5' -58.4 NC_002794.1 + 120767 0.7 0.700952
Target:  5'- uGGCCCUGCugcgacGCCGAuucgccUCGGCGAG-GGu -3'
miRNA:   3'- -CUGGGGCGc-----UGGCUu-----AGCCGCUCaCC- -5'
11114 5' -58.4 NC_002794.1 + 121795 0.67 0.841944
Target:  5'- cGGCCaCCGCGACCGGc-CGGCGccUGc -3'
miRNA:   3'- -CUGG-GGCGCUGGCUuaGCCGCucACc -5'
11114 5' -58.4 NC_002794.1 + 122305 0.66 0.89149
Target:  5'- aGugCCCGCuGGCCGucgcCGuGCGcGUGGc -3'
miRNA:   3'- -CugGGGCG-CUGGCuua-GC-CGCuCACC- -5'
11114 5' -58.4 NC_002794.1 + 126671 0.71 0.613625
Target:  5'- gGGCCgCgGCGAgggcCCGAAUCGGgGAGggagGGg -3'
miRNA:   3'- -CUGG-GgCGCU----GGCUUAGCCgCUCa---CC- -5'
11114 5' -58.4 NC_002794.1 + 127264 0.66 0.878306
Target:  5'- cGACCacgaCCGCGACgGucaCGGUGAcgGUGGa -3'
miRNA:   3'- -CUGG----GGCGCUGgCuuaGCCGCU--CACC- -5'
11114 5' -58.4 NC_002794.1 + 127905 0.74 0.472165
Target:  5'- uGACCCUGUgaGACCGAGggGGCGGGgauucgGGg -3'
miRNA:   3'- -CUGGGGCG--CUGGCUUagCCGCUCa-----CC- -5'
11114 5' -58.4 NC_002794.1 + 128065 0.66 0.871413
Target:  5'- cACCgaCCGUGAgggccgaauggcCCGAGUCGGCGAcggGGa -3'
miRNA:   3'- cUGG--GGCGCU------------GGCUUAGCCGCUca-CC- -5'
11114 5' -58.4 NC_002794.1 + 129161 0.7 0.710494
Target:  5'- cGGCCCuCGCGGCCGAuggccguucgAUCGGCcuccGGGUc- -3'
miRNA:   3'- -CUGGG-GCGCUGGCU----------UAGCCG----CUCAcc -5'
11114 5' -58.4 NC_002794.1 + 129204 0.75 0.437121
Target:  5'- cGACCgaGCGGCCGA--CGGCG-GUGGa -3'
miRNA:   3'- -CUGGggCGCUGGCUuaGCCGCuCACC- -5'
11114 5' -58.4 NC_002794.1 + 130004 0.69 0.774255
Target:  5'- cGGCCCCggaGCGugCGggUCGGCcucgcgcGAGg-- -3'
miRNA:   3'- -CUGGGG---CGCugGCuuAGCCG-------CUCacc -5'
11114 5' -58.4 NC_002794.1 + 130294 0.66 0.89149
Target:  5'- cGCuCCCGgGuCCGGAaCGGCGAGa-- -3'
miRNA:   3'- cUG-GGGCgCuGGCUUaGCCGCUCacc -5'
11114 5' -58.4 NC_002794.1 + 131714 0.66 0.897774
Target:  5'- gGACCCCgagaGCGAgCGAGcgGGCGAGa-- -3'
miRNA:   3'- -CUGGGG----CGCUgGCUUagCCGCUCacc -5'
11114 5' -58.4 NC_002794.1 + 134172 0.66 0.878306
Target:  5'- uGGCCgCGCGGauggccaccUCGuAUCGGCuGGUGGg -3'
miRNA:   3'- -CUGGgGCGCU---------GGCuUAGCCGcUCACC- -5'
11114 5' -58.4 NC_002794.1 + 138750 0.72 0.584493
Target:  5'- cGGCCCUccgGgGGCCGAGUcgCGGCGgucGGUGGa -3'
miRNA:   3'- -CUGGGG---CgCUGGCUUA--GCCGC---UCACC- -5'
11114 5' -58.4 NC_002794.1 + 139004 0.66 0.903849
Target:  5'- aGGCUuuGCGGCUGAAgagcucgccgCGGCGAaacUGGc -3'
miRNA:   3'- -CUGGggCGCUGGCUUa---------GCCGCUc--ACC- -5'
11114 5' -58.4 NC_002794.1 + 140894 0.7 0.710494
Target:  5'- uGACCCUGuCGACCGcg-UGGCGGGa-- -3'
miRNA:   3'- -CUGGGGC-GCUGGCuuaGCCGCUCacc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.