miRNA: 3'- cUGG----GGCGC--UGGCuuAGCCGCUCaCC- -5'
miRNA: 3'- cUGgGGCGCUgGCUua----GCCGCUCaCC- -5'
miRNA: 3'- cugGGGCGCUg-GCUUaGC-CGCUCACc -5'
miRNA: 3'- cuGGGGC-GCUGGCUUa------GCCGCuCACC- -5'
miRNA: 3'- cugGGGCGCUGGcuuAGCCGCUCaCc -5'
Results 101 - 105 of 105 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11114 | 5' | -58.4 | NC_002794.1 | + | 181422 | 0.67 | 0.864325 |
|
Target: 5'- cGCCauguCCGCGaaGCCG--UCGGCGAG-GGg -3' miRNA: 3'- cUGG----GGCGC--UGGCuuAGCCGCUCaCC- -5' |
|||||||
| 11114 | 5' | -58.4 | NC_002794.1 | + | 185467 | 0.66 | 0.885 |
|
Target: 5'- aACgCCGCGGgCGGcggccgCGGCGAG-GGg -3' miRNA: 3'- cUGgGGCGCUgGCUua----GCCGCUCaCC- -5' |
|||||||
| 11114 | 5' | -58.4 | NC_002794.1 | + | 187800 | 0.66 | 0.871413 |
|
Target: 5'- --gCCCGCGAagCGAG-CGaGCGAGUGa -3' miRNA: 3'- cugGGGCGCUg-GCUUaGC-CGCUCACc -5' |
|||||||
| 11114 | 5' | -58.4 | NC_002794.1 | + | 191990 | 0.67 | 0.864325 |
|
Target: 5'- -cCUCCGaCGGCCGGGacgguagCGGCG-GUGGc -3' miRNA: 3'- cuGGGGC-GCUGGCUUa------GCCGCuCACC- -5' |
|||||||
| 11114 | 5' | -58.4 | NC_002794.1 | + | 193742 | 0.66 | 0.903849 |
|
Target: 5'- --gCCCGCGGCU---UCGGCGAGcGa -3' miRNA: 3'- cugGGGCGCUGGcuuAGCCGCUCaCc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home