miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11114 5' -58.4 NC_002794.1 + 193742 0.66 0.903849
Target:  5'- --gCCCGCGGCU---UCGGCGAGcGa -3'
miRNA:   3'- cugGGGCGCUGGcuuAGCCGCUCaCc -5'
11114 5' -58.4 NC_002794.1 + 191990 0.67 0.864325
Target:  5'- -cCUCCGaCGGCCGGGacgguagCGGCG-GUGGc -3'
miRNA:   3'- cuGGGGC-GCUGGCUUa------GCCGCuCACC- -5'
11114 5' -58.4 NC_002794.1 + 187800 0.66 0.871413
Target:  5'- --gCCCGCGAagCGAG-CGaGCGAGUGa -3'
miRNA:   3'- cugGGGCGCUg-GCUUaGC-CGCUCACc -5'
11114 5' -58.4 NC_002794.1 + 185467 0.66 0.885
Target:  5'- aACgCCGCGGgCGGcggccgCGGCGAG-GGg -3'
miRNA:   3'- cUGgGGCGCUgGCUua----GCCGCUCaCC- -5'
11114 5' -58.4 NC_002794.1 + 181422 0.67 0.864325
Target:  5'- cGCCauguCCGCGaaGCCG--UCGGCGAG-GGg -3'
miRNA:   3'- cUGG----GGCGC--UGGCuuAGCCGCUCaCC- -5'
11114 5' -58.4 NC_002794.1 + 179674 0.67 0.849585
Target:  5'- cGGCaCCCGCGGCggCGAcgguggcggCGGCGAcgGUGGc -3'
miRNA:   3'- -CUG-GGGCGCUG--GCUua-------GCCGCU--CACC- -5'
11114 5' -58.4 NC_002794.1 + 177896 0.67 0.826148
Target:  5'- aGACCgCGCGGUCGGuuuAUCGGgGAGgagGGu -3'
miRNA:   3'- -CUGGgGCGCUGGCU---UAGCCgCUCa--CC- -5'
11114 5' -58.4 NC_002794.1 + 177578 0.66 0.878306
Target:  5'- cGACgCCGUGACuCGAAggcUCGGCgGAGccucGGg -3'
miRNA:   3'- -CUGgGGCGCUG-GCUU---AGCCG-CUCa---CC- -5'
11114 5' -58.4 NC_002794.1 + 175758 0.69 0.757134
Target:  5'- gGACgCUaGUGACCGuuUCGGCggucgGAGUGGg -3'
miRNA:   3'- -CUGgGG-CGCUGGCuuAGCCG-----CUCACC- -5'
11114 5' -58.4 NC_002794.1 + 156406 0.73 0.534747
Target:  5'- cGGCgCCGCGGCCGcggccacggcCGGCGGGUGa -3'
miRNA:   3'- -CUGgGGCGCUGGCuua-------GCCGCUCACc -5'
11114 5' -58.4 NC_002794.1 + 152423 0.7 0.700952
Target:  5'- uGCCCCG-GGCCGucuGUCGGC-AGcUGGg -3'
miRNA:   3'- cUGGGGCgCUGGCu--UAGCCGcUC-ACC- -5'
11114 5' -58.4 NC_002794.1 + 151834 0.66 0.897774
Target:  5'- -cCCCCGaCG-CCGu-UCGGCGAGg-- -3'
miRNA:   3'- cuGGGGC-GCuGGCuuAGCCGCUCacc -5'
11114 5' -58.4 NC_002794.1 + 151698 0.68 0.801271
Target:  5'- cGCCCCGcCGGCCGAgcgcgccaGUCGcGCGAa-GGa -3'
miRNA:   3'- cUGGGGC-GCUGGCU--------UAGC-CGCUcaCC- -5'
11114 5' -58.4 NC_002794.1 + 150801 0.73 0.546112
Target:  5'- aGGCCCCGCGGCgGA--CGGcCGAGccgcUGGa -3'
miRNA:   3'- -CUGGGGCGCUGgCUuaGCC-GCUC----ACC- -5'
11114 5' -58.4 NC_002794.1 + 150528 0.7 0.710494
Target:  5'- cGGCCCCGUaGCCGGGcCGGCGccaUGGc -3'
miRNA:   3'- -CUGGGGCGcUGGCUUaGCCGCuc-ACC- -5'
11114 5' -58.4 NC_002794.1 + 149690 0.7 0.719975
Target:  5'- cGACUggCCGCGgggGCCGcc-UGGCGGGUGGg -3'
miRNA:   3'- -CUGG--GGCGC---UGGCuuaGCCGCUCACC- -5'
11114 5' -58.4 NC_002794.1 + 148831 0.75 0.411843
Target:  5'- uGCCCCGCGACCGGgAUCGGaucuUGGg -3'
miRNA:   3'- cUGGGGCGCUGGCU-UAGCCgcucACC- -5'
11114 5' -58.4 NC_002794.1 + 147148 0.69 0.766194
Target:  5'- cGGCCCCGgGGCCGcGagGGCcAGcUGGa -3'
miRNA:   3'- -CUGGGGCgCUGGCuUagCCGcUC-ACC- -5'
11114 5' -58.4 NC_002794.1 + 146989 0.69 0.766194
Target:  5'- cGGCgCCGcCGGCCGAcGUCGGCG-GcGGc -3'
miRNA:   3'- -CUGgGGC-GCUGGCU-UAGCCGCuCaCC- -5'
11114 5' -58.4 NC_002794.1 + 145866 0.67 0.841944
Target:  5'- cGCCgagggCCGCGACCGGAccgcgagaagCGGCGAGcgcgacgGGg -3'
miRNA:   3'- cUGG-----GGCGCUGGCUUa---------GCCGCUCa------CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.