miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11114 5' -58.4 NC_002794.1 + 120767 0.7 0.700952
Target:  5'- uGGCCCUGCugcgacGCCGAuucgccUCGGCGAG-GGu -3'
miRNA:   3'- -CUGGGGCGc-----UGGCUu-----AGCCGCUCaCC- -5'
11114 5' -58.4 NC_002794.1 + 120063 0.72 0.555641
Target:  5'- cGGCCgCGgaGGCCGAcgCGGCG-GUGGc -3'
miRNA:   3'- -CUGGgGCg-CUGGCUuaGCCGCuCACC- -5'
11114 5' -58.4 NC_002794.1 + 118673 0.68 0.801271
Target:  5'- cGACgCCCGCGGCCGccgcCGGCGGc--- -3'
miRNA:   3'- -CUG-GGGCGCUGGCuua-GCCGCUcacc -5'
11114 5' -58.4 NC_002794.1 + 118215 0.66 0.876259
Target:  5'- cGCCUCGCGGacggccacgcagcuCUGGaggauGUCGGCGGGcUGGa -3'
miRNA:   3'- cUGGGGCGCU--------------GGCU-----UAGCCGCUC-ACC- -5'
11114 5' -58.4 NC_002794.1 + 117462 0.66 0.871413
Target:  5'- aGACgCCGCGGUCG--UCGGCGuacucGUGGa -3'
miRNA:   3'- -CUGgGGCGCUGGCuuAGCCGCu----CACC- -5'
11114 5' -58.4 NC_002794.1 + 116946 0.68 0.78398
Target:  5'- -uCCCCgGCGGCgGcGUCGGCGGGcgcaGGa -3'
miRNA:   3'- cuGGGG-CGCUGgCuUAGCCGCUCa---CC- -5'
11114 5' -58.4 NC_002794.1 + 116359 0.69 0.747975
Target:  5'- cGGCCgCGCGGuCCGAccgGUCGGUGGcGUGcGg -3'
miRNA:   3'- -CUGGgGCGCU-GGCU---UAGCCGCU-CAC-C- -5'
11114 5' -58.4 NC_002794.1 + 115123 0.74 0.481147
Target:  5'- cGACCCU-CGuCUGggUCGGuCGGGUGGa -3'
miRNA:   3'- -CUGGGGcGCuGGCuuAGCC-GCUCACC- -5'
11114 5' -58.4 NC_002794.1 + 115028 0.7 0.710494
Target:  5'- cGCCCaccgucugcaggUGCGACCGGG-CGGCGGGcGGc -3'
miRNA:   3'- cUGGG------------GCGCUGGCUUaGCCGCUCaCC- -5'
11114 5' -58.4 NC_002794.1 + 114830 0.71 0.64287
Target:  5'- -cUCCgGCGGCCGAGUCGGCucgGAGg-- -3'
miRNA:   3'- cuGGGgCGCUGGCUUAGCCG---CUCacc -5'
11114 5' -58.4 NC_002794.1 + 111081 0.7 0.691359
Target:  5'- -cCCCCGuCGGCaGggUCGGCGGGcccggcgGGa -3'
miRNA:   3'- cuGGGGC-GCUGgCuuAGCCGCUCa------CC- -5'
11114 5' -58.4 NC_002794.1 + 108431 0.72 0.565218
Target:  5'- cACCCCGCGACCGGcggcacucgCGGCG-GcGGc -3'
miRNA:   3'- cUGGGGCGCUGGCUua-------GCCGCuCaCC- -5'
11114 5' -58.4 NC_002794.1 + 107522 0.68 0.78398
Target:  5'- cGACgCCGaCGGCCGGcgCGGCGccGGcGGc -3'
miRNA:   3'- -CUGgGGC-GCUGGCUuaGCCGC--UCaCC- -5'
11114 5' -58.4 NC_002794.1 + 107046 0.68 0.801271
Target:  5'- -cCCCCGCGuCgGAggCGGCGGGcgcGGc -3'
miRNA:   3'- cuGGGGCGCuGgCUuaGCCGCUCa--CC- -5'
11114 5' -58.4 NC_002794.1 + 106971 0.69 0.738723
Target:  5'- cGCCUCGCGcggcgGCCGGcaCGGCG-GUGGc -3'
miRNA:   3'- cUGGGGCGC-----UGGCUuaGCCGCuCACC- -5'
11114 5' -58.4 NC_002794.1 + 105811 0.73 0.508572
Target:  5'- gGACCgaaagCGCGACCGggUCGGuCGAGcgagcgGGa -3'
miRNA:   3'- -CUGGg----GCGCUGGCuuAGCC-GCUCa-----CC- -5'
11114 5' -58.4 NC_002794.1 + 105401 0.66 0.903849
Target:  5'- cGGCCgCCGCG-CgGAucUCGGCcuccaGGGUGGc -3'
miRNA:   3'- -CUGG-GGCGCuGgCUu-AGCCG-----CUCACC- -5'
11114 5' -58.4 NC_002794.1 + 104490 0.76 0.371789
Target:  5'- cGGCCaCgGCGGCCGggUCGgGCGAGaacGGg -3'
miRNA:   3'- -CUGG-GgCGCUGGCuuAGC-CGCUCa--CC- -5'
11114 5' -58.4 NC_002794.1 + 101582 0.82 0.176214
Target:  5'- cGGCCgCCGCGGCCGGGggGGCGGGUGc -3'
miRNA:   3'- -CUGG-GGCGCUGGCUUagCCGCUCACc -5'
11114 5' -58.4 NC_002794.1 + 100560 0.67 0.849585
Target:  5'- -uCCCCGUGGCCGAG-CGGCa----- -3'
miRNA:   3'- cuGGGGCGCUGGCUUaGCCGcucacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.