miRNA display CGI


Results 61 - 80 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11114 5' -58.4 NC_002794.1 + 96979 0.68 0.792691
Target:  5'- uGCCUCGCGAgCGcGUCacgGGCaccGAGUGGg -3'
miRNA:   3'- cUGGGGCGCUgGCuUAG---CCG---CUCACC- -5'
11114 5' -58.4 NC_002794.1 + 96719 0.66 0.903849
Target:  5'- -uCCCC-CGGCCGAGcCGGCGAc--- -3'
miRNA:   3'- cuGGGGcGCUGGCUUaGCCGCUcacc -5'
11114 5' -58.4 NC_002794.1 + 95827 0.67 0.825341
Target:  5'- cGGCCgggggagcggcggCgGCGGCCGGGgaggCGGCGGGcGGg -3'
miRNA:   3'- -CUGG-------------GgCGCUGGCUUa---GCCGCUCaCC- -5'
11114 5' -58.4 NC_002794.1 + 90391 0.67 0.833338
Target:  5'- cGCCguCCGCGAUCGGgcugcacgugagcAUCGGCcgucccGAGUGGc -3'
miRNA:   3'- cUGG--GGCGCUGGCU-------------UAGCCG------CUCACC- -5'
11114 5' -58.4 NC_002794.1 + 89515 0.66 0.897774
Target:  5'- aGACCgCGUaGGCCaGAGUCGGCgGAGg-- -3'
miRNA:   3'- -CUGGgGCG-CUGG-CUUAGCCG-CUCacc -5'
11114 5' -58.4 NC_002794.1 + 89045 0.72 0.555641
Target:  5'- -cUCCCGCGAcgaaucCCGGAUCGacGCGAGUGa -3'
miRNA:   3'- cuGGGGCGCU------GGCUUAGC--CGCUCACc -5'
11114 5' -58.4 NC_002794.1 + 86991 0.66 0.89149
Target:  5'- -gUCCgGCGGCUu--UCGGCGGcGUGGg -3'
miRNA:   3'- cuGGGgCGCUGGcuuAGCCGCU-CACC- -5'
11114 5' -58.4 NC_002794.1 + 86920 0.67 0.841944
Target:  5'- uGACgCCCGUGGCgGGca-GGCGGGgcgGGa -3'
miRNA:   3'- -CUG-GGGCGCUGgCUuagCCGCUCa--CC- -5'
11114 5' -58.4 NC_002794.1 + 86828 0.71 0.652612
Target:  5'- cGACCUCGCcggGAUCGggUCGGCGGc--- -3'
miRNA:   3'- -CUGGGGCG---CUGGCuuAGCCGCUcacc -5'
11114 5' -58.4 NC_002794.1 + 81600 0.7 0.710494
Target:  5'- --aCCCGCGGCCGGAgucgCGGaCGAGc-- -3'
miRNA:   3'- cugGGGCGCUGGCUUa---GCC-GCUCacc -5'
11114 5' -58.4 NC_002794.1 + 79809 0.66 0.885
Target:  5'- aACCgCCGCGACCa---CGcCGAGUGGc -3'
miRNA:   3'- cUGG-GGCGCUGGcuuaGCcGCUCACC- -5'
11114 5' -58.4 NC_002794.1 + 79430 0.66 0.885
Target:  5'- gGGCCCgGCGGCgGcggCGGCGAccGGc -3'
miRNA:   3'- -CUGGGgCGCUGgCuuaGCCGCUcaCC- -5'
11114 5' -58.4 NC_002794.1 + 75369 0.68 0.801271
Target:  5'- cGACCCgcCGCGGCCGGcggCGGCGGc--- -3'
miRNA:   3'- -CUGGG--GCGCUGGCUua-GCCGCUcacc -5'
11114 5' -58.4 NC_002794.1 + 72457 0.66 0.871413
Target:  5'- cGCCCCGCGcCCGGccccgCGGCGGc--- -3'
miRNA:   3'- cUGGGGCGCuGGCUua---GCCGCUcacc -5'
11114 5' -58.4 NC_002794.1 + 71797 0.69 0.738723
Target:  5'- cGCCCCcCGGCgGGcgCGGCGAGg-- -3'
miRNA:   3'- cUGGGGcGCUGgCUuaGCCGCUCacc -5'
11114 5' -58.4 NC_002794.1 + 66723 0.67 0.826148
Target:  5'- cGGCCgCCGCcACCGc--CGGCG-GUGGc -3'
miRNA:   3'- -CUGG-GGCGcUGGCuuaGCCGCuCACC- -5'
11114 5' -58.4 NC_002794.1 + 64832 0.67 0.841944
Target:  5'- cGGCgCCGaCGACCGGA-CGGCGcGGcGGc -3'
miRNA:   3'- -CUGgGGC-GCUGGCUUaGCCGC-UCaCC- -5'
11114 5' -58.4 NC_002794.1 + 63916 0.68 0.78398
Target:  5'- cGCgCCGCGACCGccgcccggcCGGCGAGUc- -3'
miRNA:   3'- cUGgGGCGCUGGCuua------GCCGCUCAcc -5'
11114 5' -58.4 NC_002794.1 + 61155 0.78 0.299971
Target:  5'- cGACCCCgagcgcGCGGuCCGGAUCGGCGGcUGGu -3'
miRNA:   3'- -CUGGGG------CGCU-GGCUUAGCCGCUcACC- -5'
11114 5' -58.4 NC_002794.1 + 60465 0.66 0.903849
Target:  5'- cGCuCCCGCGACUGcauccgCGGCGAcacGGa -3'
miRNA:   3'- cUG-GGGCGCUGGCuua---GCCGCUca-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.