miRNA display CGI


Results 61 - 80 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11114 5' -58.4 NC_002794.1 + 79430 0.66 0.885
Target:  5'- gGGCCCgGCGGCgGcggCGGCGAccGGc -3'
miRNA:   3'- -CUGGGgCGCUGgCuuaGCCGCUcaCC- -5'
11114 5' -58.4 NC_002794.1 + 127264 0.66 0.878306
Target:  5'- cGACCacgaCCGCGACgGucaCGGUGAcgGUGGa -3'
miRNA:   3'- -CUGG----GGCGCUGgCuuaGCCGCU--CACC- -5'
11114 5' -58.4 NC_002794.1 + 179674 0.67 0.849585
Target:  5'- cGGCaCCCGCGGCggCGAcgguggcggCGGCGAcgGUGGc -3'
miRNA:   3'- -CUG-GGGCGCUG--GCUua-------GCCGCU--CACC- -5'
11114 5' -58.4 NC_002794.1 + 100560 0.67 0.849585
Target:  5'- -uCCCCGUGGCCGAG-CGGCa----- -3'
miRNA:   3'- cuGGGGCGCUGGCUUaGCCGcucacc -5'
11114 5' -58.4 NC_002794.1 + 18570 0.67 0.849585
Target:  5'- cGugCCCGCGACCGucUCGaCGAc-GGa -3'
miRNA:   3'- -CugGGGCGCUGGCuuAGCcGCUcaCC- -5'
11114 5' -58.4 NC_002794.1 + 145866 0.67 0.841944
Target:  5'- cGCCgagggCCGCGACCGGAccgcgagaagCGGCGAGcgcgacgGGg -3'
miRNA:   3'- cUGG-----GGCGCUGGCUUa---------GCCGCUCa------CC- -5'
11114 5' -58.4 NC_002794.1 + 142125 0.67 0.848829
Target:  5'- cGACCCgGCGGCCGAccgccggGUcaCGGCgGAGgcGGc -3'
miRNA:   3'- -CUGGGgCGCUGGCU-------UA--GCCG-CUCa-CC- -5'
11114 5' -58.4 NC_002794.1 + 64832 0.67 0.841944
Target:  5'- cGGCgCCGaCGACCGGA-CGGCGcGGcGGc -3'
miRNA:   3'- -CUGgGGC-GCUGGCUUaGCCGC-UCaCC- -5'
11114 5' -58.4 NC_002794.1 + 121795 0.67 0.841944
Target:  5'- cGGCCaCCGCGACCGGc-CGGCGccUGc -3'
miRNA:   3'- -CUGG-GGCGCUGGCUuaGCCGCucACc -5'
11114 5' -58.4 NC_002794.1 + 55351 0.67 0.841944
Target:  5'- cGCCCgagGCGGCCGAggCGGcCGAGgcGGc -3'
miRNA:   3'- cUGGGg--CGCUGGCUuaGCC-GCUCa-CC- -5'
11114 5' -58.4 NC_002794.1 + 181422 0.67 0.864325
Target:  5'- cGCCauguCCGCGaaGCCG--UCGGCGAG-GGg -3'
miRNA:   3'- cUGG----GGCGC--UGGCuuAGCCGCUCaCC- -5'
11114 5' -58.4 NC_002794.1 + 191990 0.67 0.864325
Target:  5'- -cCUCCGaCGGCCGGGacgguagCGGCG-GUGGc -3'
miRNA:   3'- cuGGGGC-GCUGGCUUa------GCCGCuCACC- -5'
11114 5' -58.4 NC_002794.1 + 177578 0.66 0.878306
Target:  5'- cGACgCCGUGACuCGAAggcUCGGCgGAGccucGGg -3'
miRNA:   3'- -CUGgGGCGCUG-GCUU---AGCCG-CUCa---CC- -5'
11114 5' -58.4 NC_002794.1 + 59187 0.66 0.877625
Target:  5'- gGACCCCGUGGCgguCGAcgcgcacGUCGGCGucucGGc -3'
miRNA:   3'- -CUGGGGCGCUG---GCU-------UAGCCGCuca-CC- -5'
11114 5' -58.4 NC_002794.1 + 128065 0.66 0.871413
Target:  5'- cACCgaCCGUGAgggccgaauggcCCGAGUCGGCGAcggGGa -3'
miRNA:   3'- cUGG--GGCGCU------------GGCUUAGCCGCUca-CC- -5'
11114 5' -58.4 NC_002794.1 + 187800 0.66 0.871413
Target:  5'- --gCCCGCGAagCGAG-CGaGCGAGUGa -3'
miRNA:   3'- cugGGGCGCUg-GCUUaGC-CGCUCACc -5'
11114 5' -58.4 NC_002794.1 + 118215 0.66 0.876259
Target:  5'- cGCCUCGCGGacggccacgcagcuCUGGaggauGUCGGCGGGcUGGa -3'
miRNA:   3'- cUGGGGCGCU--------------GGCU-----UAGCCGCUC-ACC- -5'
11114 5' -58.4 NC_002794.1 + 117462 0.66 0.871413
Target:  5'- aGACgCCGCGGUCG--UCGGCGuacucGUGGa -3'
miRNA:   3'- -CUGgGGCGCUGGCuuAGCCGCu----CACC- -5'
11114 5' -58.4 NC_002794.1 + 72457 0.66 0.871413
Target:  5'- cGCCCCGCGcCCGGccccgCGGCGGc--- -3'
miRNA:   3'- cUGGGGCGCuGGCUua---GCCGCUcacc -5'
11114 5' -58.4 NC_002794.1 + 34776 0.66 0.871413
Target:  5'- cGGCcgCCCGCGccaGCCGAGUCGGcCGAa--- -3'
miRNA:   3'- -CUG--GGGCGC---UGGCUUAGCC-GCUcacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.