Results 81 - 100 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 90391 | 0.67 | 0.833338 |
Target: 5'- cGCCguCCGCGAUCGGgcugcacgugagcAUCGGCcgucccGAGUGGc -3' miRNA: 3'- cUGG--GGCGCUGGCU-------------UAGCCG------CUCACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 177896 | 0.67 | 0.826148 |
Target: 5'- aGACCgCGCGGUCGGuuuAUCGGgGAGgagGGu -3' miRNA: 3'- -CUGGgGCGCUGGCU---UAGCCgCUCa--CC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 118673 | 0.68 | 0.801271 |
Target: 5'- cGACgCCCGCGGCCGccgcCGGCGGc--- -3' miRNA: 3'- -CUG-GGGCGCUGGCuua-GCCGCUcacc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 145297 | 0.68 | 0.801271 |
Target: 5'- cGACCCCGCuGucguauuaaACCGGcgcgCGGCGGGcGGc -3' miRNA: 3'- -CUGGGGCG-C---------UGGCUua--GCCGCUCaCC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 151698 | 0.68 | 0.801271 |
Target: 5'- cGCCCCGcCGGCCGAgcgcgccaGUCGcGCGAa-GGa -3' miRNA: 3'- cUGGGGC-GCUGGCU--------UAGC-CGCUcaCC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 95827 | 0.67 | 0.825341 |
Target: 5'- cGGCCgggggagcggcggCgGCGGCCGGGgaggCGGCGGGcGGg -3' miRNA: 3'- -CUGG-------------GgCGCUGGCUUa---GCCGCUCaCC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 107046 | 0.68 | 0.801271 |
Target: 5'- -cCCCCGCGuCgGAggCGGCGGGcgcGGc -3' miRNA: 3'- cuGGGGCGCuGgCUuaGCCGCUCa--CC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 55351 | 0.67 | 0.841944 |
Target: 5'- cGCCCgagGCGGCCGAggCGGcCGAGgcGGc -3' miRNA: 3'- cUGGGg--CGCUGGCUuaGCC-GCUCa-CC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 121795 | 0.67 | 0.841944 |
Target: 5'- cGGCCaCCGCGACCGGc-CGGCGccUGc -3' miRNA: 3'- -CUGG-GGCGCUGGCUuaGCCGCucACc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 64832 | 0.67 | 0.841944 |
Target: 5'- cGGCgCCGaCGACCGGA-CGGCGcGGcGGc -3' miRNA: 3'- -CUGgGGC-GCUGGCUUaGCCGC-UCaCC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 117462 | 0.66 | 0.871413 |
Target: 5'- aGACgCCGCGGUCG--UCGGCGuacucGUGGa -3' miRNA: 3'- -CUGgGGCGCUGGCuuAGCCGCu----CACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 72457 | 0.66 | 0.871413 |
Target: 5'- cGCCCCGCGcCCGGccccgCGGCGGc--- -3' miRNA: 3'- cUGGGGCGCuGGCUua---GCCGCUcacc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 34776 | 0.66 | 0.871413 |
Target: 5'- cGGCcgCCCGCGccaGCCGAGUCGGcCGAa--- -3' miRNA: 3'- -CUG--GGGCGC---UGGCUUAGCC-GCUcacc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 191990 | 0.67 | 0.864325 |
Target: 5'- -cCUCCGaCGGCCGGGacgguagCGGCG-GUGGc -3' miRNA: 3'- cuGGGGC-GCUGGCUUa------GCCGCuCACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 181422 | 0.67 | 0.864325 |
Target: 5'- cGCCauguCCGCGaaGCCG--UCGGCGAG-GGg -3' miRNA: 3'- cUGG----GGCGC--UGGCuuAGCCGCUCaCC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 179674 | 0.67 | 0.849585 |
Target: 5'- cGGCaCCCGCGGCggCGAcgguggcggCGGCGAcgGUGGc -3' miRNA: 3'- -CUG-GGGCGCUG--GCUua-------GCCGCU--CACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 100560 | 0.67 | 0.849585 |
Target: 5'- -uCCCCGUGGCCGAG-CGGCa----- -3' miRNA: 3'- cuGGGGCGCUGGCUUaGCCGcucacc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 18570 | 0.67 | 0.849585 |
Target: 5'- cGugCCCGCGACCGucUCGaCGAc-GGa -3' miRNA: 3'- -CugGGGCGCUGGCuuAGCcGCUcaCC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 145866 | 0.67 | 0.841944 |
Target: 5'- cGCCgagggCCGCGACCGGAccgcgagaagCGGCGAGcgcgacgGGg -3' miRNA: 3'- cUGG-----GGCGCUGGCUUa---------GCCGCUCa------CC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 142125 | 0.67 | 0.848829 |
Target: 5'- cGACCCgGCGGCCGAccgccggGUcaCGGCgGAGgcGGc -3' miRNA: 3'- -CUGGGgCGCUGGCU-------UA--GCCG-CUCa-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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