Results 101 - 105 of 105 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11114 | 5' | -58.4 | NC_002794.1 | + | 145866 | 0.67 | 0.841944 |
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Target: 5'- cGCCgagggCCGCGACCGGAccgcgagaagCGGCGAGcgcgacgGGg -3' miRNA: 3'- cUGG-----GGCGCUGGCUUa---------GCCGCUCa------CC- -5' |
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| 11114 | 5' | -58.4 | NC_002794.1 | + | 142125 | 0.67 | 0.848829 |
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Target: 5'- cGACCCgGCGGCCGAccgccggGUcaCGGCgGAGgcGGc -3' miRNA: 3'- -CUGGGgCGCUGGCU-------UA--GCCG-CUCa-CC- -5' |
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| 11114 | 5' | -58.4 | NC_002794.1 | + | 64832 | 0.67 | 0.841944 |
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Target: 5'- cGGCgCCGaCGACCGGA-CGGCGcGGcGGc -3' miRNA: 3'- -CUGgGGC-GCUGGCUUaGCCGC-UCaCC- -5' |
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| 11114 | 5' | -58.4 | NC_002794.1 | + | 121795 | 0.67 | 0.841944 |
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Target: 5'- cGGCCaCCGCGACCGGc-CGGCGccUGc -3' miRNA: 3'- -CUGG-GGCGCUGGCUuaGCCGCucACc -5' |
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| 11114 | 5' | -58.4 | NC_002794.1 | + | 116946 | 0.68 | 0.78398 |
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Target: 5'- -uCCCCgGCGGCgGcGUCGGCGGGcgcaGGa -3' miRNA: 3'- cuGGGG-CGCUGgCuUAGCCGCUCa---CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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