Results 61 - 80 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11114 | 5' | -58.4 | NC_002794.1 | + | 79430 | 0.66 | 0.885 |
Target: 5'- gGGCCCgGCGGCgGcggCGGCGAccGGc -3' miRNA: 3'- -CUGGGgCGCUGgCuuaGCCGCUcaCC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 127264 | 0.66 | 0.878306 |
Target: 5'- cGACCacgaCCGCGACgGucaCGGUGAcgGUGGa -3' miRNA: 3'- -CUGG----GGCGCUGgCuuaGCCGCU--CACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 179674 | 0.67 | 0.849585 |
Target: 5'- cGGCaCCCGCGGCggCGAcgguggcggCGGCGAcgGUGGc -3' miRNA: 3'- -CUG-GGGCGCUG--GCUua-------GCCGCU--CACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 100560 | 0.67 | 0.849585 |
Target: 5'- -uCCCCGUGGCCGAG-CGGCa----- -3' miRNA: 3'- cuGGGGCGCUGGCUUaGCCGcucacc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 18570 | 0.67 | 0.849585 |
Target: 5'- cGugCCCGCGACCGucUCGaCGAc-GGa -3' miRNA: 3'- -CugGGGCGCUGGCuuAGCcGCUcaCC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 145866 | 0.67 | 0.841944 |
Target: 5'- cGCCgagggCCGCGACCGGAccgcgagaagCGGCGAGcgcgacgGGg -3' miRNA: 3'- cUGG-----GGCGCUGGCUUa---------GCCGCUCa------CC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 142125 | 0.67 | 0.848829 |
Target: 5'- cGACCCgGCGGCCGAccgccggGUcaCGGCgGAGgcGGc -3' miRNA: 3'- -CUGGGgCGCUGGCU-------UA--GCCG-CUCa-CC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 64832 | 0.67 | 0.841944 |
Target: 5'- cGGCgCCGaCGACCGGA-CGGCGcGGcGGc -3' miRNA: 3'- -CUGgGGC-GCUGGCUUaGCCGC-UCaCC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 121795 | 0.67 | 0.841944 |
Target: 5'- cGGCCaCCGCGACCGGc-CGGCGccUGc -3' miRNA: 3'- -CUGG-GGCGCUGGCUuaGCCGCucACc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 55351 | 0.67 | 0.841944 |
Target: 5'- cGCCCgagGCGGCCGAggCGGcCGAGgcGGc -3' miRNA: 3'- cUGGGg--CGCUGGCUuaGCC-GCUCa-CC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 181422 | 0.67 | 0.864325 |
Target: 5'- cGCCauguCCGCGaaGCCG--UCGGCGAG-GGg -3' miRNA: 3'- cUGG----GGCGC--UGGCuuAGCCGCUCaCC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 191990 | 0.67 | 0.864325 |
Target: 5'- -cCUCCGaCGGCCGGGacgguagCGGCG-GUGGc -3' miRNA: 3'- cuGGGGC-GCUGGCUUa------GCCGCuCACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 177578 | 0.66 | 0.878306 |
Target: 5'- cGACgCCGUGACuCGAAggcUCGGCgGAGccucGGg -3' miRNA: 3'- -CUGgGGCGCUG-GCUU---AGCCG-CUCa---CC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 59187 | 0.66 | 0.877625 |
Target: 5'- gGACCCCGUGGCgguCGAcgcgcacGUCGGCGucucGGc -3' miRNA: 3'- -CUGGGGCGCUG---GCU-------UAGCCGCuca-CC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 128065 | 0.66 | 0.871413 |
Target: 5'- cACCgaCCGUGAgggccgaauggcCCGAGUCGGCGAcggGGa -3' miRNA: 3'- cUGG--GGCGCU------------GGCUUAGCCGCUca-CC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 187800 | 0.66 | 0.871413 |
Target: 5'- --gCCCGCGAagCGAG-CGaGCGAGUGa -3' miRNA: 3'- cugGGGCGCUg-GCUUaGC-CGCUCACc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 118215 | 0.66 | 0.876259 |
Target: 5'- cGCCUCGCGGacggccacgcagcuCUGGaggauGUCGGCGGGcUGGa -3' miRNA: 3'- cUGGGGCGCU--------------GGCU-----UAGCCGCUC-ACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 117462 | 0.66 | 0.871413 |
Target: 5'- aGACgCCGCGGUCG--UCGGCGuacucGUGGa -3' miRNA: 3'- -CUGgGGCGCUGGCuuAGCCGCu----CACC- -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 72457 | 0.66 | 0.871413 |
Target: 5'- cGCCCCGCGcCCGGccccgCGGCGGc--- -3' miRNA: 3'- cUGGGGCGCuGGCUua---GCCGCUcacc -5' |
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11114 | 5' | -58.4 | NC_002794.1 | + | 34776 | 0.66 | 0.871413 |
Target: 5'- cGGCcgCCCGCGccaGCCGAGUCGGcCGAa--- -3' miRNA: 3'- -CUG--GGGCGC---UGGCUUAGCC-GCUcacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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