Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 609 | 0.69 | 0.827103 |
Target: 5'- cGGGUGCGGUCAGGcgGCccggugugGCGUUCGCc -3' miRNA: 3'- aCCUGCGCUAGUCCa-CG--------UGCGAGUGc -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 105063 | 0.7 | 0.782911 |
Target: 5'- cUGGACGgGGUCgccguccAGGUGCGCGaaacaGCGg -3' miRNA: 3'- -ACCUGCgCUAG-------UCCACGUGCgag--UGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 181064 | 0.7 | 0.756209 |
Target: 5'- cGGAgaaCGCGGguccgggCAGGgGCACGCUCuCGa -3' miRNA: 3'- aCCU---GCGCUa------GUCCaCGUGCGAGuGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 101714 | 0.7 | 0.737267 |
Target: 5'- aGGACGUGuUCGuGGUGCACGUggGCc -3' miRNA: 3'- aCCUGCGCuAGU-CCACGUGCGagUGc -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 146839 | 0.7 | 0.783814 |
Target: 5'- uUGG-CGCGAgagUC-GGUGCGCGUcguUCGCGu -3' miRNA: 3'- -ACCuGCGCU---AGuCCACGUGCG---AGUGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 90394 | 0.7 | 0.783814 |
Target: 5'- cGucCGCGAUCGGGcUGCACGUgagCAuCGg -3' miRNA: 3'- aCcuGCGCUAGUCC-ACGUGCGa--GU-GC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 873 | 0.7 | 0.783814 |
Target: 5'- cGcGAgGCGGUCGGcGUGCGCGCgggC-CGg -3' miRNA: 3'- aC-CUgCGCUAGUC-CACGUGCGa--GuGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 57487 | 0.72 | 0.628641 |
Target: 5'- --cGCGCGAcCAGGUGCGCGCgccCGCc -3' miRNA: 3'- accUGCGCUaGUCCACGUGCGa--GUGc -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 57123 | 0.72 | 0.63866 |
Target: 5'- aUGGAgCGCGGcCuGGUGCACaacuuccuGCUCACGc -3' miRNA: 3'- -ACCU-GCGCUaGuCCACGUG--------CGAGUGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 33653 | 0.72 | 0.668658 |
Target: 5'- cGGGCGCGcUgAGcGUGCacucGCGCUCGCu -3' miRNA: 3'- aCCUGCGCuAgUC-CACG----UGCGAGUGc -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 113150 | 0.73 | 0.618624 |
Target: 5'- cGGGCGCG-UCAGcGUGUAgCGCgCGCGg -3' miRNA: 3'- aCCUGCGCuAGUC-CACGU-GCGaGUGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 38769 | 0.74 | 0.520081 |
Target: 5'- cUGGACGUucucGAUCAuGUGCGCGCUCcugACGu -3' miRNA: 3'- -ACCUGCG----CUAGUcCACGUGCGAG---UGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 36353 | 0.75 | 0.51052 |
Target: 5'- cGGcguGCGCGGccacCGGGUGCGCGCcCGCGg -3' miRNA: 3'- aCC---UGCGCUa---GUCCACGUGCGaGUGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 78453 | 0.75 | 0.48602 |
Target: 5'- cGGACGCGcucgcggucucggucAUCAGGcGCACGCUCu-- -3' miRNA: 3'- aCCUGCGC---------------UAGUCCaCGUGCGAGugc -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 99592 | 0.76 | 0.411078 |
Target: 5'- aGGGCGCGG-CGgcGGcGCGCGCUCGCGc -3' miRNA: 3'- aCCUGCGCUaGU--CCaCGUGCGAGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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