Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 105206 | 0.67 | 0.879718 |
Target: 5'- cGGACGCGGugaUCAGGgucgacagggccgUGCgcgGCGC-CACGc -3' miRNA: 3'- aCCUGCGCU---AGUCC-------------ACG---UGCGaGUGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 184338 | 0.67 | 0.880411 |
Target: 5'- gGGACaGCGA-CAGGguccGCA-GCUCGCa -3' miRNA: 3'- aCCUG-CGCUaGUCCa---CGUgCGAGUGc -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 134901 | 0.67 | 0.880411 |
Target: 5'- cGGACGCGcUCGGGUGaaacuuuuCGC-CGCc -3' miRNA: 3'- aCCUGCGCuAGUCCACgu------GCGaGUGc -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 117487 | 0.67 | 0.893167 |
Target: 5'- gUGGAUGgcgugcagguccuCGAUCAGGUGCugGgUgCGCc -3' miRNA: 3'- -ACCUGC-------------GCUAGUCCACGugCgA-GUGc -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 182319 | 0.66 | 0.933704 |
Target: 5'- cGGACggGCGGUCGGGcggGCGgGCgaGCGg -3' miRNA: 3'- aCCUG--CGCUAGUCCa--CGUgCGagUGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 128258 | 0.66 | 0.933704 |
Target: 5'- cUGGuCGCGGUCGGG-GC-CGagCGCGg -3' miRNA: 3'- -ACCuGCGCUAGUCCaCGuGCgaGUGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 143746 | 0.66 | 0.933704 |
Target: 5'- cGGACGCGccgcCGGGggGCucCGCUCGuCGu -3' miRNA: 3'- aCCUGCGCua--GUCCa-CGu-GCGAGU-GC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 188951 | 0.66 | 0.933704 |
Target: 5'- cGGGCGUGcgCAGGUuCAgGUcCACGc -3' miRNA: 3'- aCCUGCGCuaGUCCAcGUgCGaGUGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 179166 | 0.66 | 0.932223 |
Target: 5'- gUGGACGCGA-CAGGUcgucccggaccaccGCAgGCaCGCc -3' miRNA: 3'- -ACCUGCGCUaGUCCA--------------CGUgCGaGUGc -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 148132 | 0.66 | 0.923446 |
Target: 5'- cGGGCGCGGggccgcCGGGgcgaGgGCGgUCGCGa -3' miRNA: 3'- aCCUGCGCUa-----GUCCa---CgUGCgAGUGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 147439 | 0.66 | 0.928689 |
Target: 5'- cUGGACGgcuaCGggCGcGUGUAUGCUCACu -3' miRNA: 3'- -ACCUGC----GCuaGUcCACGUGCGAGUGc -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 94408 | 0.66 | 0.923446 |
Target: 5'- gGGAcCGCGGUguGGgGCGCGC-C-CGa -3' miRNA: 3'- aCCU-GCGCUAguCCaCGUGCGaGuGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 37230 | 0.66 | 0.923446 |
Target: 5'- cGGACcucgcCGAUCAGGUcGUcgACGCUCuCGc -3' miRNA: 3'- aCCUGc----GCUAGUCCA-CG--UGCGAGuGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 125039 | 0.66 | 0.917973 |
Target: 5'- -cGGCGCaGAUCcuGGUGCACGCgaaccCGCc -3' miRNA: 3'- acCUGCG-CUAGu-CCACGUGCGa----GUGc -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 128961 | 0.66 | 0.938021 |
Target: 5'- cGGACGagucgcuCGAUCuGGUGCagauccgaGCGCUCuagcuCGg -3' miRNA: 3'- aCCUGC-------GCUAGuCCACG--------UGCGAGu----GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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