miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11115 3' -56.4 NC_002794.1 + 110792 0.68 0.851101
Target:  5'- aGGACGUuguccGAcCAGGUGCGCG-UCAgGg -3'
miRNA:   3'- aCCUGCG-----CUaGUCCACGUGCgAGUgC- -5'
11115 3' -56.4 NC_002794.1 + 122646 0.68 0.851101
Target:  5'- gUGGACGUGAUCuaccUGCugGCggCGCa -3'
miRNA:   3'- -ACCUGCGCUAGucc-ACGugCGa-GUGc -5'
11115 3' -56.4 NC_002794.1 + 126159 0.68 0.854175
Target:  5'- gGGACGCGGUCuacgcgcagaggucGGUGCugaACuaUCACGu -3'
miRNA:   3'- aCCUGCGCUAGu-------------CCACG---UGcgAGUGC- -5'
11115 3' -56.4 NC_002794.1 + 115645 0.68 0.866159
Target:  5'- aGGGCGUGAgccaggagCuGGUGCAgGCggaaacUCACGa -3'
miRNA:   3'- aCCUGCGCUa-------GuCCACGUgCG------AGUGC- -5'
11115 3' -56.4 NC_002794.1 + 36285 0.68 0.866159
Target:  5'- ---cCGCGAcugCGGGUGCACgaGCUCGCc -3'
miRNA:   3'- accuGCGCUa--GUCCACGUG--CGAGUGc -5'
11115 3' -56.4 NC_002794.1 + 49040 0.68 0.866159
Target:  5'- -cGGCGCGGUCgucagcguccAGG-GCGCGCagCACGa -3'
miRNA:   3'- acCUGCGCUAG----------UCCaCGUGCGa-GUGC- -5'
11115 3' -56.4 NC_002794.1 + 137776 0.68 0.866159
Target:  5'- aGGAUGgGGUCgAGGUGCAgG-UCGCu -3'
miRNA:   3'- aCCUGCgCUAG-UCCACGUgCgAGUGc -5'
11115 3' -56.4 NC_002794.1 + 126251 0.68 0.873389
Target:  5'- gUGGcGCGCGAggUCGGcG-GCugGCUgGCGg -3'
miRNA:   3'- -ACC-UGCGCU--AGUC-CaCGugCGAgUGC- -5'
11115 3' -56.4 NC_002794.1 + 25114 0.68 0.873389
Target:  5'- aGGAC-CGGUCgagaucgagcGGG-GCACGCgcgCACGg -3'
miRNA:   3'- aCCUGcGCUAG----------UCCaCGUGCGa--GUGC- -5'
11115 3' -56.4 NC_002794.1 + 105206 0.67 0.879718
Target:  5'- cGGACGCGGugaUCAGGgucgacagggccgUGCgcgGCGC-CACGc -3'
miRNA:   3'- aCCUGCGCU---AGUCC-------------ACG---UGCGaGUGC- -5'
11115 3' -56.4 NC_002794.1 + 117365 0.67 0.880411
Target:  5'- uUGGA-GCGG-CGGGccgccUGCACGgUCGCGg -3'
miRNA:   3'- -ACCUgCGCUaGUCC-----ACGUGCgAGUGC- -5'
11115 3' -56.4 NC_002794.1 + 134901 0.67 0.880411
Target:  5'- cGGACGCGcUCGGGUGaaacuuuuCGC-CGCc -3'
miRNA:   3'- aCCUGCGCuAGUCCACgu------GCGaGUGc -5'
11115 3' -56.4 NC_002794.1 + 184338 0.67 0.880411
Target:  5'- gGGACaGCGA-CAGGguccGCA-GCUCGCa -3'
miRNA:   3'- aCCUG-CGCUaGUCCa---CGUgCGAGUGc -5'
11115 3' -56.4 NC_002794.1 + 111168 0.67 0.880411
Target:  5'- -aGACGCGGUgCAGG-GCGCGC--ACGa -3'
miRNA:   3'- acCUGCGCUA-GUCCaCGUGCGagUGC- -5'
11115 3' -56.4 NC_002794.1 + 117487 0.67 0.893167
Target:  5'- gUGGAUGgcgugcagguccuCGAUCAGGUGCugGgUgCGCc -3'
miRNA:   3'- -ACCUGC-------------GCUAGUCCACGugCgA-GUGc -5'
11115 3' -56.4 NC_002794.1 + 135493 0.67 0.900192
Target:  5'- -cGACGCGcgCGGGcccgaUGCccgcacaccggACGCUCGCGc -3'
miRNA:   3'- acCUGCGCuaGUCC-----ACG-----------UGCGAGUGC- -5'
11115 3' -56.4 NC_002794.1 + 30866 0.67 0.900192
Target:  5'- aGGugaagaaGCGGUC-GGUGUACaGCUCGCu -3'
miRNA:   3'- aCCug-----CGCUAGuCCACGUG-CGAGUGc -5'
11115 3' -56.4 NC_002794.1 + 117851 0.67 0.906345
Target:  5'- cGGAgCGCGA-CGGGggcugGCGCGC-CAgGg -3'
miRNA:   3'- aCCU-GCGCUaGUCCa----CGUGCGaGUgC- -5'
11115 3' -56.4 NC_002794.1 + 99260 0.67 0.906345
Target:  5'- cGGAgGgGcUCGGGggcuccgGCGCGCUCcCGg -3'
miRNA:   3'- aCCUgCgCuAGUCCa------CGUGCGAGuGC- -5'
11115 3' -56.4 NC_002794.1 + 122294 0.67 0.906345
Target:  5'- cGGGCGCGA--GGaGUGCcCGCUgGCc -3'
miRNA:   3'- aCCUGCGCUagUC-CACGuGCGAgUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.