Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 117487 | 0.67 | 0.893167 |
Target: 5'- gUGGAUGgcgugcagguccuCGAUCAGGUGCugGgUgCGCc -3' miRNA: 3'- -ACCUGC-------------GCUAGUCCACGugCgA-GUGc -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 134901 | 0.67 | 0.880411 |
Target: 5'- cGGACGCGcUCGGGUGaaacuuuuCGC-CGCc -3' miRNA: 3'- aCCUGCGCuAGUCCACgu------GCGaGUGc -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 184338 | 0.67 | 0.880411 |
Target: 5'- gGGACaGCGA-CAGGguccGCA-GCUCGCa -3' miRNA: 3'- aCCUG-CGCUaGUCCa---CGUgCGAGUGc -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 111168 | 0.67 | 0.880411 |
Target: 5'- -aGACGCGGUgCAGG-GCGCGC--ACGa -3' miRNA: 3'- acCUGCGCUA-GUCCaCGUGCGagUGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 117365 | 0.67 | 0.880411 |
Target: 5'- uUGGA-GCGG-CGGGccgccUGCACGgUCGCGg -3' miRNA: 3'- -ACCUgCGCUaGUCC-----ACGUGCgAGUGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 105206 | 0.67 | 0.879718 |
Target: 5'- cGGACGCGGugaUCAGGgucgacagggccgUGCgcgGCGC-CACGc -3' miRNA: 3'- aCCUGCGCU---AGUCC-------------ACG---UGCGaGUGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 126251 | 0.68 | 0.873389 |
Target: 5'- gUGGcGCGCGAggUCGGcG-GCugGCUgGCGg -3' miRNA: 3'- -ACC-UGCGCU--AGUC-CaCGugCGAgUGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 25114 | 0.68 | 0.873389 |
Target: 5'- aGGAC-CGGUCgagaucgagcGGG-GCACGCgcgCACGg -3' miRNA: 3'- aCCUGcGCUAG----------UCCaCGUGCGa--GUGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 36285 | 0.68 | 0.866159 |
Target: 5'- ---cCGCGAcugCGGGUGCACgaGCUCGCc -3' miRNA: 3'- accuGCGCUa--GUCCACGUG--CGAGUGc -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 115645 | 0.68 | 0.866159 |
Target: 5'- aGGGCGUGAgccaggagCuGGUGCAgGCggaaacUCACGa -3' miRNA: 3'- aCCUGCGCUa-------GuCCACGUgCG------AGUGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 49040 | 0.68 | 0.866159 |
Target: 5'- -cGGCGCGGUCgucagcguccAGG-GCGCGCagCACGa -3' miRNA: 3'- acCUGCGCUAG----------UCCaCGUGCGa-GUGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 137776 | 0.68 | 0.866159 |
Target: 5'- aGGAUGgGGUCgAGGUGCAgG-UCGCu -3' miRNA: 3'- aCCUGCgCUAG-UCCACGUgCgAGUGc -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 126159 | 0.68 | 0.854175 |
Target: 5'- gGGACGCGGUCuacgcgcagaggucGGUGCugaACuaUCACGu -3' miRNA: 3'- aCCUGCGCUAGu-------------CCACG---UGcgAGUGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 122646 | 0.68 | 0.851101 |
Target: 5'- gUGGACGUGAUCuaccUGCugGCggCGCa -3' miRNA: 3'- -ACCUGCGCUAGucc-ACGugCGa-GUGc -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 110792 | 0.68 | 0.851101 |
Target: 5'- aGGACGUuguccGAcCAGGUGCGCG-UCAgGg -3' miRNA: 3'- aCCUGCG-----CUaGUCCACGUGCgAGUgC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 104563 | 0.68 | 0.846433 |
Target: 5'- cUGGAUGCGGuccaccagcuUCAGGUuguugcggcacgaguGCaggauGCGCUCGCGc -3' miRNA: 3'- -ACCUGCGCU----------AGUCCA---------------CG-----UGCGAGUGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 149462 | 0.68 | 0.835282 |
Target: 5'- aGGGgGCGGUCgaggagcgagggGGGgcgGCAUGCUCGgGg -3' miRNA: 3'- aCCUgCGCUAG------------UCCa--CGUGCGAGUgC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 609 | 0.69 | 0.827103 |
Target: 5'- cGGGUGCGGUCAGGcgGCccggugugGCGUUCGCc -3' miRNA: 3'- aCCUGCGCUAGUCCa-CG--------UGCGAGUGc -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 11269 | 0.69 | 0.827103 |
Target: 5'- gGcGACGCGGUCAccuGGUgGCGCGUcCGCa -3' miRNA: 3'- aC-CUGCGCUAGU---CCA-CGUGCGaGUGc -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 107926 | 0.69 | 0.810244 |
Target: 5'- uUGGACGCGcGUCgaAGaGcgGCugGCUCGCu -3' miRNA: 3'- -ACCUGCGC-UAG--UC-Ca-CGugCGAGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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