miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11115 3' -56.4 NC_002794.1 + 609 0.69 0.827103
Target:  5'- cGGGUGCGGUCAGGcgGCccggugugGCGUUCGCc -3'
miRNA:   3'- aCCUGCGCUAGUCCa-CG--------UGCGAGUGc -5'
11115 3' -56.4 NC_002794.1 + 873 0.7 0.783814
Target:  5'- cGcGAgGCGGUCGGcGUGCGCGCgggC-CGg -3'
miRNA:   3'- aC-CUgCGCUAGUC-CACGUGCGa--GuGC- -5'
11115 3' -56.4 NC_002794.1 + 11269 0.69 0.827103
Target:  5'- gGcGACGCGGUCAccuGGUgGCGCGUcCGCa -3'
miRNA:   3'- aC-CUGCGCUAGU---CCA-CGUGCGaGUGc -5'
11115 3' -56.4 NC_002794.1 + 25114 0.68 0.873389
Target:  5'- aGGAC-CGGUCgagaucgagcGGG-GCACGCgcgCACGg -3'
miRNA:   3'- aCCUGcGCUAG----------UCCaCGUGCGa--GUGC- -5'
11115 3' -56.4 NC_002794.1 + 30866 0.67 0.900192
Target:  5'- aGGugaagaaGCGGUC-GGUGUACaGCUCGCu -3'
miRNA:   3'- aCCug-----CGCUAGuCCACGUG-CGAGUGc -5'
11115 3' -56.4 NC_002794.1 + 33653 0.72 0.668658
Target:  5'- cGGGCGCGcUgAGcGUGCacucGCGCUCGCu -3'
miRNA:   3'- aCCUGCGCuAgUC-CACG----UGCGAGUGc -5'
11115 3' -56.4 NC_002794.1 + 36285 0.68 0.866159
Target:  5'- ---cCGCGAcugCGGGUGCACgaGCUCGCc -3'
miRNA:   3'- accuGCGCUa--GUCCACGUG--CGAGUGc -5'
11115 3' -56.4 NC_002794.1 + 36353 0.75 0.51052
Target:  5'- cGGcguGCGCGGccacCGGGUGCGCGCcCGCGg -3'
miRNA:   3'- aCC---UGCGCUa---GUCCACGUGCGaGUGC- -5'
11115 3' -56.4 NC_002794.1 + 37230 0.66 0.923446
Target:  5'- cGGACcucgcCGAUCAGGUcGUcgACGCUCuCGc -3'
miRNA:   3'- aCCUGc----GCUAGUCCA-CG--UGCGAGuGC- -5'
11115 3' -56.4 NC_002794.1 + 38769 0.74 0.520081
Target:  5'- cUGGACGUucucGAUCAuGUGCGCGCUCcugACGu -3'
miRNA:   3'- -ACCUGCG----CUAGUcCACGUGCGAG---UGC- -5'
11115 3' -56.4 NC_002794.1 + 42596 0.67 0.912273
Target:  5'- aGGGCGCGGcggcCGGGaGCGgGCUCucuCGa -3'
miRNA:   3'- aCCUGCGCUa---GUCCaCGUgCGAGu--GC- -5'
11115 3' -56.4 NC_002794.1 + 49040 0.68 0.866159
Target:  5'- -cGGCGCGGUCgucagcguccAGG-GCGCGCagCACGa -3'
miRNA:   3'- acCUGCGCUAG----------UCCaCGUGCGa-GUGC- -5'
11115 3' -56.4 NC_002794.1 + 57123 0.72 0.63866
Target:  5'- aUGGAgCGCGGcCuGGUGCACaacuuccuGCUCACGc -3'
miRNA:   3'- -ACCU-GCGCUaGuCCACGUG--------CGAGUGC- -5'
11115 3' -56.4 NC_002794.1 + 57487 0.72 0.628641
Target:  5'- --cGCGCGAcCAGGUGCGCGCgccCGCc -3'
miRNA:   3'- accUGCGCUaGUCCACGUGCGa--GUGc -5'
11115 3' -56.4 NC_002794.1 + 78453 0.75 0.48602
Target:  5'- cGGACGCGcucgcggucucggucAUCAGGcGCACGCUCu-- -3'
miRNA:   3'- aCCUGCGC---------------UAGUCCaCGUGCGAGugc -5'
11115 3' -56.4 NC_002794.1 + 90394 0.7 0.783814
Target:  5'- cGucCGCGAUCGGGcUGCACGUgagCAuCGg -3'
miRNA:   3'- aCcuGCGCUAGUCC-ACGUGCGa--GU-GC- -5'
11115 3' -56.4 NC_002794.1 + 91229 0.67 0.912273
Target:  5'- cGGACgGCGcggcggccGUCGGGcu-GCGCUCGCGg -3'
miRNA:   3'- aCCUG-CGC--------UAGUCCacgUGCGAGUGC- -5'
11115 3' -56.4 NC_002794.1 + 94408 0.66 0.923446
Target:  5'- gGGAcCGCGGUguGGgGCGCGC-C-CGa -3'
miRNA:   3'- aCCU-GCGCUAguCCaCGUGCGaGuGC- -5'
11115 3' -56.4 NC_002794.1 + 99260 0.67 0.906345
Target:  5'- cGGAgGgGcUCGGGggcuccgGCGCGCUCcCGg -3'
miRNA:   3'- aCCUgCgCuAGUCCa------CGUGCGAGuGC- -5'
11115 3' -56.4 NC_002794.1 + 99592 0.76 0.411078
Target:  5'- aGGGCGCGG-CGgcGGcGCGCGCUCGCGc -3'
miRNA:   3'- aCCUGCGCUaGU--CCaCGUGCGAGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.