Results 21 - 40 of 55 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 101714 | 0.7 | 0.737267 |
Target: 5'- aGGACGUGuUCGuGGUGCACGUggGCc -3' miRNA: 3'- aCCUGCGCuAGU-CCACGUGCGagUGc -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 104563 | 0.68 | 0.846433 |
Target: 5'- cUGGAUGCGGuccaccagcuUCAGGUuguugcggcacgaguGCaggauGCGCUCGCGc -3' miRNA: 3'- -ACCUGCGCU----------AGUCCA---------------CG-----UGCGAGUGC- -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 105063 | 0.7 | 0.782911 |
Target: 5'- cUGGACGgGGUCgccguccAGGUGCGCGaaacaGCGg -3' miRNA: 3'- -ACCUGCgCUAG-------UCCACGUGCgag--UGC- -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 105136 | 0.69 | 0.792765 |
Target: 5'- aGGAUGCGGUCGcGGaGCACGUa-GCGg -3' miRNA: 3'- aCCUGCGCUAGU-CCaCGUGCGagUGC- -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 105206 | 0.67 | 0.879718 |
Target: 5'- cGGACGCGGugaUCAGGgucgacagggccgUGCgcgGCGC-CACGc -3' miRNA: 3'- aCCUGCGCU---AGUCC-------------ACG---UGCGaGUGC- -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 107926 | 0.69 | 0.810244 |
Target: 5'- uUGGACGCGcGUCgaAGaGcgGCugGCUCGCu -3' miRNA: 3'- -ACCUGCGC-UAG--UC-Ca-CGugCGAGUGc -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 110792 | 0.68 | 0.851101 |
Target: 5'- aGGACGUuguccGAcCAGGUGCGCG-UCAgGg -3' miRNA: 3'- aCCUGCG-----CUaGUCCACGUGCgAGUgC- -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 111168 | 0.67 | 0.880411 |
Target: 5'- -aGACGCGGUgCAGG-GCGCGC--ACGa -3' miRNA: 3'- acCUGCGCUA-GUCCaCGUGCGagUGC- -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 113150 | 0.73 | 0.618624 |
Target: 5'- cGGGCGCG-UCAGcGUGUAgCGCgCGCGg -3' miRNA: 3'- aCCUGCGCuAGUC-CACGU-GCGaGUGC- -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 115645 | 0.68 | 0.866159 |
Target: 5'- aGGGCGUGAgccaggagCuGGUGCAgGCggaaacUCACGa -3' miRNA: 3'- aCCUGCGCUa-------GuCCACGUgCG------AGUGC- -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 116413 | 0.67 | 0.912273 |
Target: 5'- gGGGCGCGAgcacCAGG-GCGCgGgUCAgGa -3' miRNA: 3'- aCCUGCGCUa---GUCCaCGUG-CgAGUgC- -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 117365 | 0.67 | 0.880411 |
Target: 5'- uUGGA-GCGG-CGGGccgccUGCACGgUCGCGg -3' miRNA: 3'- -ACCUgCGCUaGUCC-----ACGUGCgAGUGC- -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 117487 | 0.67 | 0.893167 |
Target: 5'- gUGGAUGgcgugcagguccuCGAUCAGGUGCugGgUgCGCc -3' miRNA: 3'- -ACCUGC-------------GCUAGUCCACGugCgA-GUGc -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 117851 | 0.67 | 0.906345 |
Target: 5'- cGGAgCGCGA-CGGGggcugGCGCGC-CAgGg -3' miRNA: 3'- aCCU-GCGCUaGUCCa----CGUGCGaGUgC- -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 122294 | 0.67 | 0.906345 |
Target: 5'- cGGGCGCGA--GGaGUGCcCGCUgGCc -3' miRNA: 3'- aCCUGCGCUagUC-CACGuGCGAgUGc -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 122646 | 0.68 | 0.851101 |
Target: 5'- gUGGACGUGAUCuaccUGCugGCggCGCa -3' miRNA: 3'- -ACCUGCGCUAGucc-ACGugCGa-GUGc -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 125039 | 0.66 | 0.917973 |
Target: 5'- -cGGCGCaGAUCcuGGUGCACGCgaaccCGCc -3' miRNA: 3'- acCUGCG-CUAGu-CCACGUGCGa----GUGc -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 126159 | 0.68 | 0.854175 |
Target: 5'- gGGACGCGGUCuacgcgcagaggucGGUGCugaACuaUCACGu -3' miRNA: 3'- aCCUGCGCUAGu-------------CCACG---UGcgAGUGC- -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 126251 | 0.68 | 0.873389 |
Target: 5'- gUGGcGCGCGAggUCGGcG-GCugGCUgGCGg -3' miRNA: 3'- -ACC-UGCGCU--AGUC-CaCGugCGAgUGC- -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 128258 | 0.66 | 0.933704 |
Target: 5'- cUGGuCGCGGUCGGG-GC-CGagCGCGg -3' miRNA: 3'- -ACCuGCGCUAGUCCaCGuGCgaGUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home