miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11115 3' -56.4 NC_002794.1 + 188951 0.66 0.933704
Target:  5'- cGGGCGUGcgCAGGUuCAgGUcCACGc -3'
miRNA:   3'- aCCUGCGCuaGUCCAcGUgCGaGUGC- -5'
11115 3' -56.4 NC_002794.1 + 184338 0.67 0.880411
Target:  5'- gGGACaGCGA-CAGGguccGCA-GCUCGCa -3'
miRNA:   3'- aCCUG-CGCUaGUCCa---CGUgCGAGUGc -5'
11115 3' -56.4 NC_002794.1 + 182319 0.66 0.933704
Target:  5'- cGGACggGCGGUCGGGcggGCGgGCgaGCGg -3'
miRNA:   3'- aCCUG--CGCUAGUCCa--CGUgCGagUGC- -5'
11115 3' -56.4 NC_002794.1 + 181064 0.7 0.756209
Target:  5'- cGGAgaaCGCGGguccgggCAGGgGCACGCUCuCGa -3'
miRNA:   3'- aCCU---GCGCUa------GUCCaCGUGCGAGuGC- -5'
11115 3' -56.4 NC_002794.1 + 179166 0.66 0.932223
Target:  5'- gUGGACGCGA-CAGGUcgucccggaccaccGCAgGCaCGCc -3'
miRNA:   3'- -ACCUGCGCUaGUCCA--------------CGUgCGaGUGc -5'
11115 3' -56.4 NC_002794.1 + 149462 0.68 0.835282
Target:  5'- aGGGgGCGGUCgaggagcgagggGGGgcgGCAUGCUCGgGg -3'
miRNA:   3'- aCCUgCGCUAG------------UCCa--CGUGCGAGUgC- -5'
11115 3' -56.4 NC_002794.1 + 148132 0.66 0.923446
Target:  5'- cGGGCGCGGggccgcCGGGgcgaGgGCGgUCGCGa -3'
miRNA:   3'- aCCUGCGCUa-----GUCCa---CgUGCgAGUGC- -5'
11115 3' -56.4 NC_002794.1 + 147439 0.66 0.928689
Target:  5'- cUGGACGgcuaCGggCGcGUGUAUGCUCACu -3'
miRNA:   3'- -ACCUGC----GCuaGUcCACGUGCGAGUGc -5'
11115 3' -56.4 NC_002794.1 + 146839 0.7 0.783814
Target:  5'- uUGG-CGCGAgagUC-GGUGCGCGUcguUCGCGu -3'
miRNA:   3'- -ACCuGCGCU---AGuCCACGUGCG---AGUGC- -5'
11115 3' -56.4 NC_002794.1 + 143746 0.66 0.933704
Target:  5'- cGGACGCGccgcCGGGggGCucCGCUCGuCGu -3'
miRNA:   3'- aCCUGCGCua--GUCCa-CGu-GCGAGU-GC- -5'
11115 3' -56.4 NC_002794.1 + 140678 0.67 0.912273
Target:  5'- cGGGCGCaGGUC-GGUGCGacggaccggcCGC-CGCGa -3'
miRNA:   3'- aCCUGCG-CUAGuCCACGU----------GCGaGUGC- -5'
11115 3' -56.4 NC_002794.1 + 137776 0.68 0.866159
Target:  5'- aGGAUGgGGUCgAGGUGCAgG-UCGCu -3'
miRNA:   3'- aCCUGCgCUAG-UCCACGUgCgAGUGc -5'
11115 3' -56.4 NC_002794.1 + 135493 0.67 0.900192
Target:  5'- -cGACGCGcgCGGGcccgaUGCccgcacaccggACGCUCGCGc -3'
miRNA:   3'- acCUGCGCuaGUCC-----ACG-----------UGCGAGUGC- -5'
11115 3' -56.4 NC_002794.1 + 134901 0.67 0.880411
Target:  5'- cGGACGCGcUCGGGUGaaacuuuuCGC-CGCc -3'
miRNA:   3'- aCCUGCGCuAGUCCACgu------GCGaGUGc -5'
11115 3' -56.4 NC_002794.1 + 128961 0.66 0.938021
Target:  5'- cGGACGagucgcuCGAUCuGGUGCagauccgaGCGCUCuagcuCGg -3'
miRNA:   3'- aCCUGC-------GCUAGuCCACG--------UGCGAGu----GC- -5'
11115 3' -56.4 NC_002794.1 + 128258 0.66 0.933704
Target:  5'- cUGGuCGCGGUCGGG-GC-CGagCGCGg -3'
miRNA:   3'- -ACCuGCGCUAGUCCaCGuGCgaGUGC- -5'
11115 3' -56.4 NC_002794.1 + 126251 0.68 0.873389
Target:  5'- gUGGcGCGCGAggUCGGcG-GCugGCUgGCGg -3'
miRNA:   3'- -ACC-UGCGCU--AGUC-CaCGugCGAgUGC- -5'
11115 3' -56.4 NC_002794.1 + 126159 0.68 0.854175
Target:  5'- gGGACGCGGUCuacgcgcagaggucGGUGCugaACuaUCACGu -3'
miRNA:   3'- aCCUGCGCUAGu-------------CCACG---UGcgAGUGC- -5'
11115 3' -56.4 NC_002794.1 + 125039 0.66 0.917973
Target:  5'- -cGGCGCaGAUCcuGGUGCACGCgaaccCGCc -3'
miRNA:   3'- acCUGCG-CUAGu-CCACGUGCGa----GUGc -5'
11115 3' -56.4 NC_002794.1 + 122646 0.68 0.851101
Target:  5'- gUGGACGUGAUCuaccUGCugGCggCGCa -3'
miRNA:   3'- -ACCUGCGCUAGucc-ACGugCGa-GUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.