Results 41 - 55 of 55 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 125039 | 0.66 | 0.917973 |
Target: 5'- -cGGCGCaGAUCcuGGUGCACGCgaaccCGCc -3' miRNA: 3'- acCUGCG-CUAGu-CCACGUGCGa----GUGc -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 116413 | 0.67 | 0.912273 |
Target: 5'- gGGGCGCGAgcacCAGG-GCGCgGgUCAgGa -3' miRNA: 3'- aCCUGCGCUa---GUCCaCGUG-CgAGUgC- -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 42596 | 0.67 | 0.912273 |
Target: 5'- aGGGCGCGGcggcCGGGaGCGgGCUCucuCGa -3' miRNA: 3'- aCCUGCGCUa---GUCCaCGUgCGAGu--GC- -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 117365 | 0.67 | 0.880411 |
Target: 5'- uUGGA-GCGG-CGGGccgccUGCACGgUCGCGg -3' miRNA: 3'- -ACCUgCGCUaGUCC-----ACGUGCgAGUGC- -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 111168 | 0.67 | 0.880411 |
Target: 5'- -aGACGCGGUgCAGG-GCGCGC--ACGa -3' miRNA: 3'- acCUGCGCUA-GUCCaCGUGCGagUGC- -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 105206 | 0.67 | 0.879718 |
Target: 5'- cGGACGCGGugaUCAGGgucgacagggccgUGCgcgGCGC-CACGc -3' miRNA: 3'- aCCUGCGCU---AGUCC-------------ACG---UGCGaGUGC- -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 184338 | 0.67 | 0.880411 |
Target: 5'- gGGACaGCGA-CAGGguccGCA-GCUCGCa -3' miRNA: 3'- aCCUG-CGCUaGUCCa---CGUgCGAGUGc -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 134901 | 0.67 | 0.880411 |
Target: 5'- cGGACGCGcUCGGGUGaaacuuuuCGC-CGCc -3' miRNA: 3'- aCCUGCGCuAGUCCACgu------GCGaGUGc -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 117487 | 0.67 | 0.893167 |
Target: 5'- gUGGAUGgcgugcagguccuCGAUCAGGUGCugGgUgCGCc -3' miRNA: 3'- -ACCUGC-------------GCUAGUCCACGugCgA-GUGc -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 135493 | 0.67 | 0.900192 |
Target: 5'- -cGACGCGcgCGGGcccgaUGCccgcacaccggACGCUCGCGc -3' miRNA: 3'- acCUGCGCuaGUCC-----ACG-----------UGCGAGUGC- -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 30866 | 0.67 | 0.900192 |
Target: 5'- aGGugaagaaGCGGUC-GGUGUACaGCUCGCu -3' miRNA: 3'- aCCug-----CGCUAGuCCACGUG-CGAGUGc -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 117851 | 0.67 | 0.906345 |
Target: 5'- cGGAgCGCGA-CGGGggcugGCGCGC-CAgGg -3' miRNA: 3'- aCCU-GCGCUaGUCCa----CGUGCGaGUgC- -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 99260 | 0.67 | 0.906345 |
Target: 5'- cGGAgGgGcUCGGGggcuccgGCGCGCUCcCGg -3' miRNA: 3'- aCCUgCgCuAGUCCa------CGUGCGAGuGC- -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 122294 | 0.67 | 0.906345 |
Target: 5'- cGGGCGCGA--GGaGUGCcCGCUgGCc -3' miRNA: 3'- aCCUGCGCUagUC-CACGuGCGAgUGc -5' |
|||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 128961 | 0.66 | 0.938021 |
Target: 5'- cGGACGagucgcuCGAUCuGGUGCagauccgaGCGCUCuagcuCGg -3' miRNA: 3'- aCCUGC-------GCUAGuCCACG--------UGCGAGu----GC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home