Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11115 | 3' | -56.4 | NC_002794.1 | + | 117487 | 0.67 | 0.893167 |
Target: 5'- gUGGAUGgcgugcagguccuCGAUCAGGUGCugGgUgCGCc -3' miRNA: 3'- -ACCUGC-------------GCUAGUCCACGugCgA-GUGc -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 135493 | 0.67 | 0.900192 |
Target: 5'- -cGACGCGcgCGGGcccgaUGCccgcacaccggACGCUCGCGc -3' miRNA: 3'- acCUGCGCuaGUCC-----ACG-----------UGCGAGUGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 94408 | 0.66 | 0.923446 |
Target: 5'- gGGAcCGCGGUguGGgGCGCGC-C-CGa -3' miRNA: 3'- aCCU-GCGCUAguCCaCGUGCGaGuGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 147439 | 0.66 | 0.928689 |
Target: 5'- cUGGACGgcuaCGggCGcGUGUAUGCUCACu -3' miRNA: 3'- -ACCUGC----GCuaGUcCACGUGCGAGUGc -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 148132 | 0.66 | 0.923446 |
Target: 5'- cGGGCGCGGggccgcCGGGgcgaGgGCGgUCGCGa -3' miRNA: 3'- aCCUGCGCUa-----GUCCa---CgUGCgAGUGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 179166 | 0.66 | 0.932223 |
Target: 5'- gUGGACGCGA-CAGGUcgucccggaccaccGCAgGCaCGCc -3' miRNA: 3'- -ACCUGCGCUaGUCCA--------------CGUgCGaGUGc -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 188951 | 0.66 | 0.933704 |
Target: 5'- cGGGCGUGcgCAGGUuCAgGUcCACGc -3' miRNA: 3'- aCCUGCGCuaGUCCAcGUgCGaGUGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 143746 | 0.66 | 0.933704 |
Target: 5'- cGGACGCGccgcCGGGggGCucCGCUCGuCGu -3' miRNA: 3'- aCCUGCGCua--GUCCa-CGu-GCGAGU-GC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 128258 | 0.66 | 0.933704 |
Target: 5'- cUGGuCGCGGUCGGG-GC-CGagCGCGg -3' miRNA: 3'- -ACCuGCGCUAGUCCaCGuGCgaGUGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 182319 | 0.66 | 0.933704 |
Target: 5'- cGGACggGCGGUCGGGcggGCGgGCgaGCGg -3' miRNA: 3'- aCCUG--CGCUAGUCCa--CGUgCGagUGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 37230 | 0.66 | 0.923446 |
Target: 5'- cGGACcucgcCGAUCAGGUcGUcgACGCUCuCGc -3' miRNA: 3'- aCCUGc----GCUAGUCCA-CG--UGCGAGuGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 91229 | 0.67 | 0.912273 |
Target: 5'- cGGACgGCGcggcggccGUCGGGcu-GCGCUCGCGg -3' miRNA: 3'- aCCUG-CGC--------UAGUCCacgUGCGAGUGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 30866 | 0.67 | 0.900192 |
Target: 5'- aGGugaagaaGCGGUC-GGUGUACaGCUCGCu -3' miRNA: 3'- aCCug-----CGCUAGuCCACGUG-CGAGUGc -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 117851 | 0.67 | 0.906345 |
Target: 5'- cGGAgCGCGA-CGGGggcugGCGCGC-CAgGg -3' miRNA: 3'- aCCU-GCGCUaGUCCa----CGUGCGaGUgC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 99260 | 0.67 | 0.906345 |
Target: 5'- cGGAgGgGcUCGGGggcuccgGCGCGCUCcCGg -3' miRNA: 3'- aCCUgCgCuAGUCCa------CGUGCGAGuGC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 122294 | 0.67 | 0.906345 |
Target: 5'- cGGGCGCGA--GGaGUGCcCGCUgGCc -3' miRNA: 3'- aCCUGCGCUagUC-CACGuGCGAgUGc -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 42596 | 0.67 | 0.912273 |
Target: 5'- aGGGCGCGGcggcCGGGaGCGgGCUCucuCGa -3' miRNA: 3'- aCCUGCGCUa---GUCCaCGUgCGAGu--GC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 116413 | 0.67 | 0.912273 |
Target: 5'- gGGGCGCGAgcacCAGG-GCGCgGgUCAgGa -3' miRNA: 3'- aCCUGCGCUa---GUCCaCGUG-CgAGUgC- -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 125039 | 0.66 | 0.917973 |
Target: 5'- -cGGCGCaGAUCcuGGUGCACGCgaaccCGCc -3' miRNA: 3'- acCUGCG-CUAGu-CCACGUGCGa----GUGc -5' |
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11115 | 3' | -56.4 | NC_002794.1 | + | 140678 | 0.67 | 0.912273 |
Target: 5'- cGGGCGCaGGUC-GGUGCGacggaccggcCGC-CGCGa -3' miRNA: 3'- aCCUGCG-CUAGuCCACGU----------GCGaGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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