miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11115 5' -54.6 NC_002794.1 + 46411 0.66 0.959344
Target:  5'- -cCGGGaAGCGCGCccgaACGUGAucUCGAcGGAa -3'
miRNA:   3'- caGUCC-UCGCGCG----UGUACU--AGCU-CUU- -5'
11115 5' -54.6 NC_002794.1 + 115440 0.66 0.959344
Target:  5'- gGUCAGGAGCa-GC---UGGUCGAGAu -3'
miRNA:   3'- -CAGUCCUCGcgCGuguACUAGCUCUu -5'
11115 5' -54.6 NC_002794.1 + 145232 0.66 0.959344
Target:  5'- uGUCGGaGGCGCGCGCGcugcggaagcgGAUCGcGAAg -3'
miRNA:   3'- -CAGUCcUCGCGCGUGUa----------CUAGCuCUU- -5'
11115 5' -54.6 NC_002794.1 + 69515 0.66 0.955572
Target:  5'- gGUCAGGuacGGCGCGUGCA----CGAGAGc -3'
miRNA:   3'- -CAGUCC---UCGCGCGUGUacuaGCUCUU- -5'
11115 5' -54.6 NC_002794.1 + 187468 0.66 0.951571
Target:  5'- cGUCGcucGGCGCGCGCcgGGcCGAGGAc -3'
miRNA:   3'- -CAGUcc-UCGCGCGUGuaCUaGCUCUU- -5'
11115 5' -54.6 NC_002794.1 + 101816 0.67 0.938146
Target:  5'- -gCAGcGGCGCGC-CGUGcgCGAGGc -3'
miRNA:   3'- caGUCcUCGCGCGuGUACuaGCUCUu -5'
11115 5' -54.6 NC_002794.1 + 57593 0.67 0.933189
Target:  5'- -aCAGGc-CGCGCGCGUGGccacCGAGAAg -3'
miRNA:   3'- caGUCCucGCGCGUGUACUa---GCUCUU- -5'
11115 5' -54.6 NC_002794.1 + 116073 0.67 0.924753
Target:  5'- gGUCGcGGAGCGCucgGCGCGgcggucgucgccggGGUCGAGGu -3'
miRNA:   3'- -CAGU-CCUCGCG---CGUGUa-------------CUAGCUCUu -5'
11115 5' -54.6 NC_002794.1 + 113491 0.67 0.91093
Target:  5'- -gCAGGAGCuCGCGCGcGGcCGAGAGc -3'
miRNA:   3'- caGUCCUCGcGCGUGUaCUaGCUCUU- -5'
11115 5' -54.6 NC_002794.1 + 60691 0.68 0.902861
Target:  5'- -aCGGGAGcCGCGCGCAcuuugggcacuaccUGAUcgcCGAGAc -3'
miRNA:   3'- caGUCCUC-GCGCGUGU--------------ACUA---GCUCUu -5'
11115 5' -54.6 NC_002794.1 + 36976 0.68 0.89835
Target:  5'- -gCAGGAGgauCGCGCGCA-GGUCGGcGAGg -3'
miRNA:   3'- caGUCCUC---GCGCGUGUaCUAGCU-CUU- -5'
11115 5' -54.6 NC_002794.1 + 191839 0.68 0.89835
Target:  5'- cUCGacGGAGaCGCGCAauCGUGGUCGuGAAa -3'
miRNA:   3'- cAGU--CCUC-GCGCGU--GUACUAGCuCUU- -5'
11115 5' -54.6 NC_002794.1 + 153354 0.7 0.804471
Target:  5'- uGUCAGGAcgcggcccggcuGCGCGCccuCGUGGUCGAu-- -3'
miRNA:   3'- -CAGUCCU------------CGCGCGu--GUACUAGCUcuu -5'
11115 5' -54.6 NC_002794.1 + 111789 0.71 0.767439
Target:  5'- cGUCAGGAGCGCcCGCA-GGUCGuAGc- -3'
miRNA:   3'- -CAGUCCUCGCGcGUGUaCUAGC-UCuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.