miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11116 3' -59.2 NC_002794.1 + 127358 0.66 0.886454
Target:  5'- cGCGGCgGCGGcgcGG-CCGCucgugucggcgGACGgCACCu -3'
miRNA:   3'- -CGCCGaUGCC---CCaGGCG-----------CUGCaGUGG- -5'
11116 3' -59.2 NC_002794.1 + 119443 0.66 0.886454
Target:  5'- aCGGCgGCGGcGG-UgGCGGCGUCgACUu -3'
miRNA:   3'- cGCCGaUGCC-CCaGgCGCUGCAG-UGG- -5'
11116 3' -59.2 NC_002794.1 + 2715 0.66 0.886454
Target:  5'- gGCGGuCUGgGGcGGUCUuugGCGAcCGagACCg -3'
miRNA:   3'- -CGCC-GAUgCC-CCAGG---CGCU-GCagUGG- -5'
11116 3' -59.2 NC_002794.1 + 120061 0.66 0.886454
Target:  5'- gGCGGCcGCGGaGGccgaCGCGGCGguggCGgCg -3'
miRNA:   3'- -CGCCGaUGCC-CCag--GCGCUGCa---GUgG- -5'
11116 3' -59.2 NC_002794.1 + 110431 0.66 0.886454
Target:  5'- gGCGGCUGuCGucGUCgGUGGCGgagGCCg -3'
miRNA:   3'- -CGCCGAU-GCccCAGgCGCUGCag-UGG- -5'
11116 3' -59.2 NC_002794.1 + 145894 0.66 0.879865
Target:  5'- aGCGGCgagcgcgACGGGGgagucgaCCGCGccgaGCGgagggGCCg -3'
miRNA:   3'- -CGCCGa------UGCCCCa------GGCGC----UGCag---UGG- -5'
11116 3' -59.2 NC_002794.1 + 54242 0.66 0.879865
Target:  5'- aGCGGCcgaGCGcGcGGUCCaCGGCGcCGCg -3'
miRNA:   3'- -CGCCGa--UGC-C-CCAGGcGCUGCaGUGg -5'
11116 3' -59.2 NC_002794.1 + 152567 0.66 0.879865
Target:  5'- aGCGGCgcuucaccgccGCGGcGG-CCGCcACGUC-CCu -3'
miRNA:   3'- -CGCCGa----------UGCC-CCaGGCGcUGCAGuGG- -5'
11116 3' -59.2 NC_002794.1 + 115978 0.66 0.879865
Target:  5'- aGCGGg-ACGGGGa--GCGGCGcCGCg -3'
miRNA:   3'- -CGCCgaUGCCCCaggCGCUGCaGUGg -5'
11116 3' -59.2 NC_002794.1 + 53904 0.66 0.879865
Target:  5'- gGCGGCguccucguCGccGUCgGCGGCGcCGCCg -3'
miRNA:   3'- -CGCCGau------GCccCAGgCGCUGCaGUGG- -5'
11116 3' -59.2 NC_002794.1 + 36360 0.66 0.879865
Target:  5'- cGCGGCcACcGGGUgcgcgcCCGCGGCGaaGCg -3'
miRNA:   3'- -CGCCGaUGcCCCA------GGCGCUGCagUGg -5'
11116 3' -59.2 NC_002794.1 + 183167 0.66 0.873079
Target:  5'- -gGGCUGCccgagccggucGGGGaCCGaGACG-CGCCg -3'
miRNA:   3'- cgCCGAUG-----------CCCCaGGCgCUGCaGUGG- -5'
11116 3' -59.2 NC_002794.1 + 61524 0.66 0.873079
Target:  5'- gGCGGCcgcCGGcGGccgCCGCGAagaCGaCGCCg -3'
miRNA:   3'- -CGCCGau-GCC-CCa--GGCGCU---GCaGUGG- -5'
11116 3' -59.2 NC_002794.1 + 105959 0.66 0.873079
Target:  5'- aCGGCUG-GGGGccgCCGCGGacgaGUUuCCg -3'
miRNA:   3'- cGCCGAUgCCCCa--GGCGCUg---CAGuGG- -5'
11116 3' -59.2 NC_002794.1 + 137583 0.66 0.873079
Target:  5'- cGgGGCcggagUGCGGGGagccgCCGCcGGCgGUCGCg -3'
miRNA:   3'- -CgCCG-----AUGCCCCa----GGCG-CUG-CAGUGg -5'
11116 3' -59.2 NC_002794.1 + 179918 0.66 0.873079
Target:  5'- aGCGGCUccgACGGuuUCgaaGaCGACGUCGCg -3'
miRNA:   3'- -CGCCGA---UGCCccAGg--C-GCUGCAGUGg -5'
11116 3' -59.2 NC_002794.1 + 121341 0.66 0.873079
Target:  5'- cGCGGCUGagaaacCGGGaaGUUCGUcgacGGCGUCcgaGCCg -3'
miRNA:   3'- -CGCCGAU------GCCC--CAGGCG----CUGCAG---UGG- -5'
11116 3' -59.2 NC_002794.1 + 66510 0.66 0.872389
Target:  5'- uCGGCgaGCGauaggccguccccGGGUCCGCGAagguCGgCGCCg -3'
miRNA:   3'- cGCCGa-UGC-------------CCCAGGCGCU----GCaGUGG- -5'
11116 3' -59.2 NC_002794.1 + 147443 0.66 0.871005
Target:  5'- aCGGCUACGGGcgcGUguaugcucacuacgCgCGCGACGacUCGCUg -3'
miRNA:   3'- cGCCGAUGCCC---CA--------------G-GCGCUGC--AGUGG- -5'
11116 3' -59.2 NC_002794.1 + 71787 0.66 0.87031
Target:  5'- cGCGGCgagucgccccccgGCGGG---CGCGGCGagGCCg -3'
miRNA:   3'- -CGCCGa------------UGCCCcagGCGCUGCagUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.