miRNA display CGI


Results 1 - 20 of 211 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11116 3' -59.2 NC_002794.1 + 14724 0.84 0.122635
Target:  5'- cGCGGCUucggcuCGGGGUCCgGCG-CGUCAUCg -3'
miRNA:   3'- -CGCCGAu-----GCCCCAGG-CGCuGCAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 30987 0.82 0.160268
Target:  5'- cCGGCgacgGCGGGGUCuuCGCcgGACGUCGCCg -3'
miRNA:   3'- cGCCGa---UGCCCCAG--GCG--CUGCAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 121398 0.8 0.193884
Target:  5'- cGCGGCcgGCGccGGGaCCGCGAcCGUCGCCg -3'
miRNA:   3'- -CGCCGa-UGC--CCCaGGCGCU-GCAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 19844 0.79 0.233514
Target:  5'- aCGGCUACGGGGaCUGCG-UGUCGCa -3'
miRNA:   3'- cGCCGAUGCCCCaGGCGCuGCAGUGg -5'
11116 3' -59.2 NC_002794.1 + 77661 0.78 0.267538
Target:  5'- uGCGGCc-CGcGGGUCUGCGGgGUCAUCg -3'
miRNA:   3'- -CGCCGauGC-CCCAGGCGCUgCAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 157872 0.78 0.279738
Target:  5'- cGUGGC-GCGGGGUuuGaCGGCGuaUCACCa -3'
miRNA:   3'- -CGCCGaUGCCCCAggC-GCUGC--AGUGG- -5'
11116 3' -59.2 NC_002794.1 + 181586 0.77 0.305457
Target:  5'- -aGGCUGCGGG--CCGCGACcggGUCGCCc -3'
miRNA:   3'- cgCCGAUGCCCcaGGCGCUG---CAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 18703 0.77 0.325911
Target:  5'- aCGGCgGCGGcGGUCCG-GACGUCggaGCCg -3'
miRNA:   3'- cGCCGaUGCC-CCAGGCgCUGCAG---UGG- -5'
11116 3' -59.2 NC_002794.1 + 48632 0.76 0.332951
Target:  5'- aGCGGCcguCGGGGcCCGCGA-GcCGCCg -3'
miRNA:   3'- -CGCCGau-GCCCCaGGCGCUgCaGUGG- -5'
11116 3' -59.2 NC_002794.1 + 115930 0.76 0.362217
Target:  5'- cGCGGCgGCGGGccggcccgCCGCG-UGUCGCCg -3'
miRNA:   3'- -CGCCGaUGCCCca------GGCGCuGCAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 55287 0.76 0.369807
Target:  5'- gGCGGCgACGaGGGcggCgGCGGCGUCGCg -3'
miRNA:   3'- -CGCCGaUGC-CCCa--GgCGCUGCAGUGg -5'
11116 3' -59.2 NC_002794.1 + 119526 0.76 0.369807
Target:  5'- cCGGCcGCGGaccccucGUCCGCGGCcGUCGCCg -3'
miRNA:   3'- cGCCGaUGCCc------CAGGCGCUG-CAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 110543 0.75 0.385312
Target:  5'- cGCGGCgacgACGuGcUCCGCGuCGUCGCCg -3'
miRNA:   3'- -CGCCGa---UGCcCcAGGCGCuGCAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 118275 0.75 0.40124
Target:  5'- gGCGGCgccggcguCGGGGaCCGCGccgggcGCGUCGCUc -3'
miRNA:   3'- -CGCCGau------GCCCCaGGCGC------UGCAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 107226 0.75 0.409359
Target:  5'- gGCGGCgcgcgACGGGG---GCGGCGUCGCg -3'
miRNA:   3'- -CGCCGa----UGCCCCaggCGCUGCAGUGg -5'
11116 3' -59.2 NC_002794.1 + 111615 0.74 0.43432
Target:  5'- -aGGCcgGCGGGGccgCCGCGGcCGcCGCCg -3'
miRNA:   3'- cgCCGa-UGCCCCa--GGCGCU-GCaGUGG- -5'
11116 3' -59.2 NC_002794.1 + 1494 0.74 0.451442
Target:  5'- gGCGGCgaccggccuuaUACGGGGUCCGgaGGCGUguUCc -3'
miRNA:   3'- -CGCCG-----------AUGCCCCAGGCg-CUGCAguGG- -5'
11116 3' -59.2 NC_002794.1 + 2025 0.74 0.460141
Target:  5'- cCGGCcuuaUACGGGGUCCgGgGGCGuguuccUCGCCa -3'
miRNA:   3'- cGCCG----AUGCCCCAGG-CgCUGC------AGUGG- -5'
11116 3' -59.2 NC_002794.1 + 1565 0.74 0.460141
Target:  5'- cCGGCcuuaUACGGGGUCCgGgGGCGuguuccUCGCCa -3'
miRNA:   3'- cGCCG----AUGCCCCAGG-CgCUGC------AGUGG- -5'
11116 3' -59.2 NC_002794.1 + 1900 0.74 0.460141
Target:  5'- cCGGCcuuaUACGGGGUCCgGgGGCGuguuccUCGCCa -3'
miRNA:   3'- cGCCG----AUGCCCCAGG-CgCUGC------AGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.