miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11116 3' -59.2 NC_002794.1 + 1565 0.74 0.460141
Target:  5'- cCGGCcuuaUACGGGGUCCgGgGGCGuguuccUCGCCa -3'
miRNA:   3'- cGCCG----AUGCCCCAGG-CgCUGC------AGUGG- -5'
11116 3' -59.2 NC_002794.1 + 53769 0.74 0.460141
Target:  5'- cCGGCgGCGGGacGcCCGCGACG-CGCCc -3'
miRNA:   3'- cGCCGaUGCCC--CaGGCGCUGCaGUGG- -5'
11116 3' -59.2 NC_002794.1 + 54863 0.73 0.468928
Target:  5'- cCGGC-GCGGGccgCCGCaGCGUCGCCu -3'
miRNA:   3'- cGCCGaUGCCCca-GGCGcUGCAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 68898 0.73 0.484059
Target:  5'- aCGGCUaccgaucgcgucGCGGGGcUCGCGGCGUCcucgucgcccgcggGCCg -3'
miRNA:   3'- cGCCGA------------UGCCCCaGGCGCUGCAG--------------UGG- -5'
11116 3' -59.2 NC_002794.1 + 182177 0.73 0.486754
Target:  5'- aGCGGCUguaccauaACGGGGccUCgGCGccgGCGUCGCg -3'
miRNA:   3'- -CGCCGA--------UGCCCC--AGgCGC---UGCAGUGg -5'
11116 3' -59.2 NC_002794.1 + 154377 0.73 0.49488
Target:  5'- cGCGGCggcgGCGGGcacgcccGUUCGCGugGU-GCCg -3'
miRNA:   3'- -CGCCGa---UGCCC-------CAGGCGCugCAgUGG- -5'
11116 3' -59.2 NC_002794.1 + 142386 0.73 0.495787
Target:  5'- aGCGGCggagACGGcGGUgCagGCGGCGUCGgCg -3'
miRNA:   3'- -CGCCGa---UGCC-CCAgG--CGCUGCAGUgG- -5'
11116 3' -59.2 NC_002794.1 + 95822 0.73 0.504894
Target:  5'- gGCGGCggcCGGGGgagCgGCGGCGgcgGCCg -3'
miRNA:   3'- -CGCCGau-GCCCCa--GgCGCUGCag-UGG- -5'
11116 3' -59.2 NC_002794.1 + 112755 0.73 0.511313
Target:  5'- cGCGGCgGCGGGGUCgGgGugaggucucggaggACGUC-CCg -3'
miRNA:   3'- -CGCCGaUGCCCCAGgCgC--------------UGCAGuGG- -5'
11116 3' -59.2 NC_002794.1 + 12229 0.73 0.514073
Target:  5'- gGCGGCgccgGCGGcgccGUCCGCGGCGcCGauCCg -3'
miRNA:   3'- -CGCCGa---UGCCc---CAGGCGCUGCaGU--GG- -5'
11116 3' -59.2 NC_002794.1 + 44509 0.73 0.514073
Target:  5'- gGCGGCccagacCGGGcccguGUCCGCGAgcgcgccgucguCGUCGCCg -3'
miRNA:   3'- -CGCCGau----GCCC-----CAGGCGCU------------GCAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 141567 0.73 0.514073
Target:  5'- cGCGGCcGCGGccUCCGUGaucaugacgcccGCGUCGCCg -3'
miRNA:   3'- -CGCCGaUGCCccAGGCGC------------UGCAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 49427 0.72 0.52332
Target:  5'- gGCGGCcgucACGGcGUCCggcGCGGuCGUCGCCg -3'
miRNA:   3'- -CGCCGa---UGCCcCAGG---CGCU-GCAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 136441 0.72 0.52332
Target:  5'- gGCGGCUGCGuccgcuguuGGGUCaggucgGCGAgGUuCGCCg -3'
miRNA:   3'- -CGCCGAUGC---------CCCAGg-----CGCUgCA-GUGG- -5'
11116 3' -59.2 NC_002794.1 + 95748 0.72 0.531696
Target:  5'- cGgGGCUgguacucGCGGGGcggcggCCGCGACGgcgGCCg -3'
miRNA:   3'- -CgCCGA-------UGCCCCa-----GGCGCUGCag-UGG- -5'
11116 3' -59.2 NC_002794.1 + 49013 0.72 0.532629
Target:  5'- cCGcGCcGCGGcGG-CCGCGGCGUCGuCCg -3'
miRNA:   3'- cGC-CGaUGCC-CCaGGCGCUGCAGU-GG- -5'
11116 3' -59.2 NC_002794.1 + 183862 0.72 0.541998
Target:  5'- cGCGGCcguCGGGGccaCCGCcGAcaccgccgcCGUCACCg -3'
miRNA:   3'- -CGCCGau-GCCCCa--GGCG-CU---------GCAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 21882 0.72 0.541998
Target:  5'- cCGGCcGCGGGGugUCCGCGgccuGCGUCGgUg -3'
miRNA:   3'- cGCCGaUGCCCC--AGGCGC----UGCAGUgG- -5'
11116 3' -59.2 NC_002794.1 + 21658 0.72 0.55142
Target:  5'- aGCGGCgGCGGuGG-CgGCGGCGguauUCGCCc -3'
miRNA:   3'- -CGCCGaUGCC-CCaGgCGCUGC----AGUGG- -5'
11116 3' -59.2 NC_002794.1 + 153698 0.72 0.560892
Target:  5'- cCGGCgacCGGuuuagcGaCCGCGACGUCACCg -3'
miRNA:   3'- cGCCGau-GCCc-----CaGGCGCUGCAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.