miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11116 3' -59.2 NC_002794.1 + 137761 0.66 0.8661
Target:  5'- gGCGGCUcgaagagcaggAUGGGGUCgagGUGcAgGUCGCUg -3'
miRNA:   3'- -CGCCGA-----------UGCCCCAGg--CGC-UgCAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 194660 0.66 0.8661
Target:  5'- uCGGCUGCGccGGGUCCcccuccggGUG-CGaCACCg -3'
miRNA:   3'- cGCCGAUGC--CCCAGG--------CGCuGCaGUGG- -5'
11116 3' -59.2 NC_002794.1 + 11528 0.66 0.8661
Target:  5'- uCGaGCUGCGGGcGaccgaggaCCGCGGCugGUCGCUa -3'
miRNA:   3'- cGC-CGAUGCCC-Ca-------GGCGCUG--CAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 185472 0.66 0.8661
Target:  5'- cGCGG--GCGGcGG-CCGCGGCGaggggacCGCCu -3'
miRNA:   3'- -CGCCgaUGCC-CCaGGCGCUGCa------GUGG- -5'
11116 3' -59.2 NC_002794.1 + 100131 0.66 0.8661
Target:  5'- aCGGgUACGGGa--CGCGGcCGUuCGCCg -3'
miRNA:   3'- cGCCgAUGCCCcagGCGCU-GCA-GUGG- -5'
11116 3' -59.2 NC_002794.1 + 79436 0.66 0.8661
Target:  5'- gGCGGCgGCGGcGGcgaCCGgcgcggagacgaCGACGcCGCCa -3'
miRNA:   3'- -CGCCGaUGCC-CCa--GGC------------GCUGCaGUGG- -5'
11116 3' -59.2 NC_002794.1 + 119772 0.66 0.8661
Target:  5'- cGCGGCcggccuccagGCGGcuccGGUCCGCcgacuugaGCGUCGCg -3'
miRNA:   3'- -CGCCGa---------UGCC----CCAGGCGc-------UGCAGUGg -5'
11116 3' -59.2 NC_002794.1 + 182539 0.66 0.865392
Target:  5'- cGCGGCaGCGacugcgCCGCGGCcggcaccGUCACCg -3'
miRNA:   3'- -CGCCGaUGCccca--GGCGCUG-------CAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 50641 0.66 0.861823
Target:  5'- gGCGGUcGCGaaugagcgaaaacauGGcGgCCGCGGCGcUCGCCg -3'
miRNA:   3'- -CGCCGaUGC---------------CC-CaGGCGCUGC-AGUGG- -5'
11116 3' -59.2 NC_002794.1 + 149865 0.66 0.858934
Target:  5'- aGCGGCcGCccgcucggGGGGUCUGgGucauCGUgACCc -3'
miRNA:   3'- -CGCCGaUG--------CCCCAGGCgCu---GCAgUGG- -5'
11116 3' -59.2 NC_002794.1 + 98977 0.66 0.858934
Target:  5'- gGCGGCgccguggccuCGGuGGUCgGCGGCuucGUCAgCu -3'
miRNA:   3'- -CGCCGau--------GCC-CCAGgCGCUG---CAGUgG- -5'
11116 3' -59.2 NC_002794.1 + 48906 0.66 0.858934
Target:  5'- cGCaGCU-CGGGGccgcUCCGCaGCGccagCGCCa -3'
miRNA:   3'- -CGcCGAuGCCCC----AGGCGcUGCa---GUGG- -5'
11116 3' -59.2 NC_002794.1 + 40128 0.66 0.858934
Target:  5'- aGCGGagagccACGGGcucUCCGCGGCuUCugCg -3'
miRNA:   3'- -CGCCga----UGCCCc--AGGCGCUGcAGugG- -5'
11116 3' -59.2 NC_002794.1 + 110474 0.66 0.858934
Target:  5'- uCGGCU-CGGGGgguagagaggCgGUGGCGgCGCCu -3'
miRNA:   3'- cGCCGAuGCCCCa---------GgCGCUGCaGUGG- -5'
11116 3' -59.2 NC_002794.1 + 116132 0.66 0.858934
Target:  5'- cGCGGCgGCGGcGG-CgGCGGCcagggccugCACCg -3'
miRNA:   3'- -CGCCGaUGCC-CCaGgCGCUGca-------GUGG- -5'
11116 3' -59.2 NC_002794.1 + 115081 0.66 0.856748
Target:  5'- aCGGCcucgGCGGccgcccgcagccgcGcGUCCGCGuCGUCACg -3'
miRNA:   3'- cGCCGa---UGCC--------------C-CAGGCGCuGCAGUGg -5'
11116 3' -59.2 NC_002794.1 + 185178 0.66 0.851585
Target:  5'- cGCGGCgcggucgGCGcGGUCgGCG-CgGUCAUCg -3'
miRNA:   3'- -CGCCGa------UGCcCCAGgCGCuG-CAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 152799 0.66 0.851585
Target:  5'- cGCGaGCUGCugcucccgaucGGGGUgCCGUgcggacacGGCGUCAgCg -3'
miRNA:   3'- -CGC-CGAUG-----------CCCCA-GGCG--------CUGCAGUgG- -5'
11116 3' -59.2 NC_002794.1 + 114369 0.66 0.851585
Target:  5'- cCGGCUGCaGGG-CCGCguaggccuuGACGUC-CUu -3'
miRNA:   3'- cGCCGAUGcCCCaGGCG---------CUGCAGuGG- -5'
11116 3' -59.2 NC_002794.1 + 32860 0.66 0.851585
Target:  5'- aGCGGCcgagccgGCGGGcGgcggCgGCGGCGgcggCAUCa -3'
miRNA:   3'- -CGCCGa------UGCCC-Ca---GgCGCUGCa---GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.