miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11116 3' -59.2 NC_002794.1 + 185178 0.66 0.851585
Target:  5'- cGCGGCgcggucgGCGcGGUCgGCG-CgGUCAUCg -3'
miRNA:   3'- -CGCCGa------UGCcCCAGgCGCuG-CAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 130666 0.66 0.848595
Target:  5'- cCGGCcGCGGGcUCCGCcGCGgccucgugggaggCGCCg -3'
miRNA:   3'- cGCCGaUGCCCcAGGCGcUGCa------------GUGG- -5'
11116 3' -59.2 NC_002794.1 + 107898 0.67 0.84709
Target:  5'- uGCGGCUGCcGGGUCUGagggaaguguguugGACG-CGCg -3'
miRNA:   3'- -CGCCGAUGcCCCAGGCg-------------CUGCaGUGg -5'
11116 3' -59.2 NC_002794.1 + 106981 0.67 0.844819
Target:  5'- gGCGGCcggcACGGcGGUggcggcgcuggccgaCGCGACGgugcUCACCg -3'
miRNA:   3'- -CGCCGa---UGCC-CCAg--------------GCGCUGC----AGUGG- -5'
11116 3' -59.2 NC_002794.1 + 107058 0.67 0.844059
Target:  5'- -aGGCgGCGGG---CGCGGCGcCGCCg -3'
miRNA:   3'- cgCCGaUGCCCcagGCGCUGCaGUGG- -5'
11116 3' -59.2 NC_002794.1 + 112318 0.67 0.844059
Target:  5'- uCGGCgccgacgGCGGGGagCGCGcCGgccggcggCGCCg -3'
miRNA:   3'- cGCCGa------UGCCCCagGCGCuGCa-------GUGG- -5'
11116 3' -59.2 NC_002794.1 + 125548 0.67 0.844059
Target:  5'- gGCGGCaGCGGuuUCUuCGGCGaCGCCa -3'
miRNA:   3'- -CGCCGaUGCCccAGGcGCUGCaGUGG- -5'
11116 3' -59.2 NC_002794.1 + 142943 0.67 0.844059
Target:  5'- gGUGGCcgaGGGGaagUCgGCGGCGUCGa- -3'
miRNA:   3'- -CGCCGaugCCCC---AGgCGCUGCAGUgg -5'
11116 3' -59.2 NC_002794.1 + 192421 0.67 0.844059
Target:  5'- cGCcGCgAC-GGGUCCGCGgccggcGCGUCGCg -3'
miRNA:   3'- -CGcCGaUGcCCCAGGCGC------UGCAGUGg -5'
11116 3' -59.2 NC_002794.1 + 92270 0.67 0.843296
Target:  5'- gGCGGCgcCGGgcgaggcgcgcaaGGUCgGCGACGagGCg -3'
miRNA:   3'- -CGCCGauGCC-------------CCAGgCGCUGCagUGg -5'
11116 3' -59.2 NC_002794.1 + 113180 0.67 0.836361
Target:  5'- gGCGGCggucGCGGaGGcgccUCCGCcGcCGcCACCg -3'
miRNA:   3'- -CGCCGa---UGCC-CC----AGGCG-CuGCaGUGG- -5'
11116 3' -59.2 NC_002794.1 + 99280 0.67 0.836361
Target:  5'- gGCGcGCUccCGGGcucuUCCGCGAcCGcCGCCa -3'
miRNA:   3'- -CGC-CGAu-GCCCc---AGGCGCU-GCaGUGG- -5'
11116 3' -59.2 NC_002794.1 + 147147 0.67 0.836361
Target:  5'- aCGGCccCGGGG-CCGCGAgG--GCCa -3'
miRNA:   3'- cGCCGauGCCCCaGGCGCUgCagUGG- -5'
11116 3' -59.2 NC_002794.1 + 68548 0.67 0.836361
Target:  5'- cGCGGCcgacaagcUGCGGGuGUcgCCGaCGGCGUU-CCg -3'
miRNA:   3'- -CGCCG--------AUGCCC-CA--GGC-GCUGCAGuGG- -5'
11116 3' -59.2 NC_002794.1 + 120192 0.67 0.836361
Target:  5'- aGCGGUUcaagggcacgaGCGGGGUCgCGCcgccCGUgUACCa -3'
miRNA:   3'- -CGCCGA-----------UGCCCCAG-GCGcu--GCA-GUGG- -5'
11116 3' -59.2 NC_002794.1 + 34249 0.67 0.835582
Target:  5'- cGCGGCUGCcgccgcaGGcGGaCCGCGcgcagGCGgccagCGCCa -3'
miRNA:   3'- -CGCCGAUG-------CC-CCaGGCGC-----UGCa----GUGG- -5'
11116 3' -59.2 NC_002794.1 + 101251 0.67 0.828497
Target:  5'- gGCGcGCaGCGGGGggCCGCcccCGgCGCCg -3'
miRNA:   3'- -CGC-CGaUGCCCCa-GGCGcu-GCaGUGG- -5'
11116 3' -59.2 NC_002794.1 + 124152 0.67 0.828497
Target:  5'- aGCGGuCUccGCGGGGcCCGgGagaGCGUCGg- -3'
miRNA:   3'- -CGCC-GA--UGCCCCaGGCgC---UGCAGUgg -5'
11116 3' -59.2 NC_002794.1 + 185434 0.67 0.828497
Target:  5'- cGCGGCgccaugcGCGGacaGGucUCCGCGACaaaCGCCg -3'
miRNA:   3'- -CGCCGa------UGCC---CC--AGGCGCUGca-GUGG- -5'
11116 3' -59.2 NC_002794.1 + 125751 0.67 0.820474
Target:  5'- cGCGGg-ACGGcGGcCgGCGGC-UCGCCa -3'
miRNA:   3'- -CGCCgaUGCC-CCaGgCGCUGcAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.