miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11116 3' -59.2 NC_002794.1 + 1494 0.74 0.451442
Target:  5'- gGCGGCgaccggccuuaUACGGGGUCCGgaGGCGUguUCc -3'
miRNA:   3'- -CGCCG-----------AUGCCCCAGGCg-CUGCAguGG- -5'
11116 3' -59.2 NC_002794.1 + 1565 0.74 0.460141
Target:  5'- cCGGCcuuaUACGGGGUCCgGgGGCGuguuccUCGCCa -3'
miRNA:   3'- cGCCG----AUGCCCCAGG-CgCUGC------AGUGG- -5'
11116 3' -59.2 NC_002794.1 + 1754 0.67 0.812298
Target:  5'- uCGGCcuuaUACGGGGUCCGgGgGCGUg--- -3'
miRNA:   3'- cGCCG----AUGCCCCAGGCgC-UGCAgugg -5'
11116 3' -59.2 NC_002794.1 + 1827 0.67 0.812298
Target:  5'- uCGGCcuuaUACGGGGUCCGgGgGCGUg--- -3'
miRNA:   3'- cGCCG----AUGCCCCAGGCgC-UGCAgugg -5'
11116 3' -59.2 NC_002794.1 + 1900 0.74 0.460141
Target:  5'- cCGGCcuuaUACGGGGUCCgGgGGCGuguuccUCGCCa -3'
miRNA:   3'- cGCCG----AUGCCCCAGG-CgCUGC------AGUGG- -5'
11116 3' -59.2 NC_002794.1 + 1963 0.7 0.657092
Target:  5'- cCGGCcuuaUACGGGGUCCGgGgGCGUguUCc -3'
miRNA:   3'- cGCCG----AUGCCCCAGGCgC-UGCAguGG- -5'
11116 3' -59.2 NC_002794.1 + 2025 0.74 0.460141
Target:  5'- cCGGCcuuaUACGGGGUCCgGgGGCGuguuccUCGCCa -3'
miRNA:   3'- cGCCG----AUGCCCCAGG-CgCUGC------AGUGG- -5'
11116 3' -59.2 NC_002794.1 + 2715 0.66 0.886454
Target:  5'- gGCGGuCUGgGGcGGUCUuugGCGAcCGagACCg -3'
miRNA:   3'- -CGCC-GAUgCC-CCAGG---CGCU-GCagUGG- -5'
11116 3' -59.2 NC_002794.1 + 11528 0.66 0.8661
Target:  5'- uCGaGCUGCGGGcGaccgaggaCCGCGGCugGUCGCUa -3'
miRNA:   3'- cGC-CGAUGCCC-Ca-------GGCGCUG--CAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 11773 0.71 0.628117
Target:  5'- uGCGacGCUcACGGGaucgccgcgguGUCCGUGGCGcCGCCg -3'
miRNA:   3'- -CGC--CGA-UGCCC-----------CAGGCGCUGCaGUGG- -5'
11116 3' -59.2 NC_002794.1 + 12229 0.73 0.514073
Target:  5'- gGCGGCgccgGCGGcgccGUCCGCGGCGcCGauCCg -3'
miRNA:   3'- -CGCCGa---UGCCc---CAGGCGCUGCaGU--GG- -5'
11116 3' -59.2 NC_002794.1 + 12307 0.68 0.755021
Target:  5'- -gGGCccGCGGgacuccuccgcGGUCCGCGugaccguggagacggACGUCACCc -3'
miRNA:   3'- cgCCGa-UGCC-----------CCAGGCGC---------------UGCAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 13108 0.68 0.772923
Target:  5'- -aGGUgcguucgGCGGGGUCgccgCGCGGCucgcucgcgcgggucGUCGCCg -3'
miRNA:   3'- cgCCGa------UGCCCCAG----GCGCUG---------------CAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 14596 0.69 0.714363
Target:  5'- cGUGGCgagcgcgcCGGGcaCCGCGACGggGCCg -3'
miRNA:   3'- -CGCCGau------GCCCcaGGCGCUGCagUGG- -5'
11116 3' -59.2 NC_002794.1 + 14724 0.84 0.122635
Target:  5'- cGCGGCUucggcuCGGGGUCCgGCG-CGUCAUCg -3'
miRNA:   3'- -CGCCGAu-----GCCCCAGG-CGCuGCAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 18703 0.77 0.325911
Target:  5'- aCGGCgGCGGcGGUCCG-GACGUCggaGCCg -3'
miRNA:   3'- cGCCGaUGCC-CCAGGCgCUGCAG---UGG- -5'
11116 3' -59.2 NC_002794.1 + 19462 0.69 0.742256
Target:  5'- aGCGGCggcgGCGGcGGgacCCGCcg-GUCGCCc -3'
miRNA:   3'- -CGCCGa---UGCC-CCa--GGCGcugCAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 19844 0.79 0.233514
Target:  5'- aCGGCUACGGGGaCUGCG-UGUCGCa -3'
miRNA:   3'- cGCCGAUGCCCCaGGCGCuGCAGUGg -5'
11116 3' -59.2 NC_002794.1 + 20985 0.67 0.812298
Target:  5'- aGCGGCgGCGGcagcGaCCGCGGCGgccacaGCCa -3'
miRNA:   3'- -CGCCGaUGCCc---CaGGCGCUGCag----UGG- -5'
11116 3' -59.2 NC_002794.1 + 21658 0.72 0.55142
Target:  5'- aGCGGCgGCGGuGG-CgGCGGCGguauUCGCCc -3'
miRNA:   3'- -CGCCGaUGCC-CCaGgCGCUGC----AGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.