miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11116 3' -59.2 NC_002794.1 + 21882 0.72 0.541998
Target:  5'- cCGGCcGCGGGGugUCCGCGgccuGCGUCGgUg -3'
miRNA:   3'- cGCCGaUGCCCC--AGGCGC----UGCAGUgG- -5'
11116 3' -59.2 NC_002794.1 + 21972 0.69 0.695441
Target:  5'- cGCGGCgcCGucGucUCCGCGAccCGUCGCCg -3'
miRNA:   3'- -CGCCGauGCccC--AGGCGCU--GCAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 23472 0.67 0.812298
Target:  5'- cGgGGCggaGGGGUCUGCcaugaucGCGcCGCCg -3'
miRNA:   3'- -CgCCGaugCCCCAGGCGc------UGCaGUGG- -5'
11116 3' -59.2 NC_002794.1 + 30061 0.67 0.803977
Target:  5'- -gGGCccGCGGGGUCCGgucgcccgguCGACGagGCg -3'
miRNA:   3'- cgCCGa-UGCCCCAGGC----------GCUGCagUGg -5'
11116 3' -59.2 NC_002794.1 + 30987 0.82 0.160268
Target:  5'- cCGGCgacgGCGGGGUCuuCGCcgGACGUCGCCg -3'
miRNA:   3'- cGCCGa---UGCCCCAG--GCG--CUGCAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 32581 0.67 0.812298
Target:  5'- cGCGGCggugcCGGGG-CCGgGGcCGggGCCg -3'
miRNA:   3'- -CGCCGau---GCCCCaGGCgCU-GCagUGG- -5'
11116 3' -59.2 NC_002794.1 + 32860 0.66 0.851585
Target:  5'- aGCGGCcgagccgGCGGGcGgcggCgGCGGCGgcggCAUCa -3'
miRNA:   3'- -CGCCGa------UGCCC-Ca---GgCGCUGCa---GUGG- -5'
11116 3' -59.2 NC_002794.1 + 34085 0.69 0.727462
Target:  5'- gGCGGCcgggcagccgucggGCGGcccGGaCCGCGACGUCcgcgACCu -3'
miRNA:   3'- -CGCCGa-------------UGCC---CCaGGCGCUGCAG----UGG- -5'
11116 3' -59.2 NC_002794.1 + 34249 0.67 0.835582
Target:  5'- cGCGGCUGCcgccgcaGGcGGaCCGCGcgcagGCGgccagCGCCa -3'
miRNA:   3'- -CGCCGAUG-------CC-CCaGGCGC-----UGCa----GUGG- -5'
11116 3' -59.2 NC_002794.1 + 36360 0.66 0.879865
Target:  5'- cGCGGCcACcGGGUgcgcgcCCGCGGCGaaGCg -3'
miRNA:   3'- -CGCCGaUGcCCCA------GGCGCUGCagUGg -5'
11116 3' -59.2 NC_002794.1 + 37737 0.69 0.714363
Target:  5'- gGCGGCgccgccgGCGGcGG--CGCGGCGgCGCCg -3'
miRNA:   3'- -CGCCGa------UGCC-CCagGCGCUGCaGUGG- -5'
11116 3' -59.2 NC_002794.1 + 37883 0.68 0.760435
Target:  5'- -gGGCgGCGGGGgcggUgGCGGCGgcagcggcUCGCCg -3'
miRNA:   3'- cgCCGaUGCCCCa---GgCGCUGC--------AGUGG- -5'
11116 3' -59.2 NC_002794.1 + 38469 0.68 0.783453
Target:  5'- cGCGGCgcgcccuuuauggGCGGaGGaagCGCGGCGgCGCCg -3'
miRNA:   3'- -CGCCGa------------UGCC-CCag-GCGCUGCaGUGG- -5'
11116 3' -59.2 NC_002794.1 + 38685 0.68 0.751392
Target:  5'- cGCGG--ACGGGGUcaccgCCGCGcCGUCgagcGCCc -3'
miRNA:   3'- -CGCCgaUGCCCCA-----GGCGCuGCAG----UGG- -5'
11116 3' -59.2 NC_002794.1 + 40128 0.66 0.858934
Target:  5'- aGCGGagagccACGGGcucUCCGCGGCuUCugCg -3'
miRNA:   3'- -CGCCga----UGCCCc--AGGCGCUGcAGugG- -5'
11116 3' -59.2 NC_002794.1 + 40407 0.7 0.637782
Target:  5'- uCGGUcGCGGGGUCgGCcGGCGacUCugCa -3'
miRNA:   3'- cGCCGaUGCCCCAGgCG-CUGC--AGugG- -5'
11116 3' -59.2 NC_002794.1 + 41292 0.71 0.608802
Target:  5'- gGCGGCUccgACGcGGG-CCGCGugGggUCuCCg -3'
miRNA:   3'- -CGCCGA---UGC-CCCaGGCGCugC--AGuGG- -5'
11116 3' -59.2 NC_002794.1 + 41334 0.67 0.803977
Target:  5'- -aGGuCUccucCGGGGUCUcCGGgGUCACCg -3'
miRNA:   3'- cgCC-GAu---GCCCCAGGcGCUgCAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 44014 0.7 0.685906
Target:  5'- cGCGGC--CGGcGUCCGCaGAcCGUCGCUc -3'
miRNA:   3'- -CGCCGauGCCcCAGGCG-CU-GCAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 44368 0.71 0.579962
Target:  5'- cGCGGCgggcGCGacGUCCGCGACGcucgacgCGCCc -3'
miRNA:   3'- -CGCCGa---UGCccCAGGCGCUGCa------GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.