miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11116 3' -59.2 NC_002794.1 + 195216 0.69 0.742256
Target:  5'- cGCcaGCUGCGGcagcaGcCCGCGcgGCGUCACCa -3'
miRNA:   3'- -CGc-CGAUGCCc----CaGGCGC--UGCAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 194660 0.66 0.8661
Target:  5'- uCGGCUGCGccGGGUCCcccuccggGUG-CGaCACCg -3'
miRNA:   3'- cGCCGAUGC--CCCAGG--------CGCuGCaGUGG- -5'
11116 3' -59.2 NC_002794.1 + 193066 0.68 0.786925
Target:  5'- cCGGCUGCGGGccGUCgCGgGACa--GCCg -3'
miRNA:   3'- cGCCGAUGCCC--CAG-GCgCUGcagUGG- -5'
11116 3' -59.2 NC_002794.1 + 192421 0.67 0.844059
Target:  5'- cGCcGCgAC-GGGUCCGCGgccggcGCGUCGCg -3'
miRNA:   3'- -CGcCGaUGcCCCAGGCGC------UGCAGUGg -5'
11116 3' -59.2 NC_002794.1 + 190757 0.68 0.786925
Target:  5'- aCGGggGCGGcGG-CCGCG-CGUC-CCg -3'
miRNA:   3'- cGCCgaUGCC-CCaGGCGCuGCAGuGG- -5'
11116 3' -59.2 NC_002794.1 + 189851 0.71 0.608802
Target:  5'- uCGGCcGCGGagccGUCgGCGuCGUCGCCg -3'
miRNA:   3'- cGCCGaUGCCc---CAGgCGCuGCAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 188252 0.7 0.685906
Target:  5'- gGCGGCgGCGGcGGUa-GCGGCGg-GCCg -3'
miRNA:   3'- -CGCCGaUGCC-CCAggCGCUGCagUGG- -5'
11116 3' -59.2 NC_002794.1 + 186294 0.71 0.579962
Target:  5'- cGCGGCcagGCGGccGGUcgCCGCGGCG-CGCUc -3'
miRNA:   3'- -CGCCGa--UGCC--CCA--GGCGCUGCaGUGG- -5'
11116 3' -59.2 NC_002794.1 + 185472 0.66 0.8661
Target:  5'- cGCGG--GCGGcGG-CCGCGGCGaggggacCGCCu -3'
miRNA:   3'- -CGCCgaUGCC-CCaGGCGCUGCa------GUGG- -5'
11116 3' -59.2 NC_002794.1 + 185434 0.67 0.828497
Target:  5'- cGCGGCgccaugcGCGGacaGGucUCCGCGACaaaCGCCg -3'
miRNA:   3'- -CGCCGa------UGCC---CC--AGGCGCUGca-GUGG- -5'
11116 3' -59.2 NC_002794.1 + 185178 0.66 0.851585
Target:  5'- cGCGGCgcggucgGCGcGGUCgGCG-CgGUCAUCg -3'
miRNA:   3'- -CGCCGa------UGCcCCAGgCGCuG-CAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 184507 0.68 0.795517
Target:  5'- gGCGGC-GCGGGccCCGCGcgcggcgcggGCGaCGCCg -3'
miRNA:   3'- -CGCCGaUGCCCcaGGCGC----------UGCaGUGG- -5'
11116 3' -59.2 NC_002794.1 + 184050 0.68 0.769377
Target:  5'- cGCGGUcGCGGG--CCGCGGCGaagcggcacgCGCCc -3'
miRNA:   3'- -CGCCGaUGCCCcaGGCGCUGCa---------GUGG- -5'
11116 3' -59.2 NC_002794.1 + 183862 0.72 0.541998
Target:  5'- cGCGGCcguCGGGGccaCCGCcGAcaccgccgcCGUCACCg -3'
miRNA:   3'- -CGCCGau-GCCCCa--GGCG-CU---------GCAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 183597 0.66 0.851585
Target:  5'- gGgGGCggaGGGGggCCGCGcGCGgccggCGCCc -3'
miRNA:   3'- -CgCCGaugCCCCa-GGCGC-UGCa----GUGG- -5'
11116 3' -59.2 NC_002794.1 + 183167 0.66 0.873079
Target:  5'- -gGGCUGCccgagccggucGGGGaCCGaGACG-CGCCg -3'
miRNA:   3'- cgCCGAUG-----------CCCCaGGCgCUGCaGUGG- -5'
11116 3' -59.2 NC_002794.1 + 182539 0.66 0.865392
Target:  5'- cGCGGCaGCGacugcgCCGCGGCcggcaccGUCACCg -3'
miRNA:   3'- -CGCCGaUGCccca--GGCGCUG-------CAGUGG- -5'
11116 3' -59.2 NC_002794.1 + 182455 0.7 0.666725
Target:  5'- uCGGagagcGCGGcGGUgCGCGGCGUCAgCa -3'
miRNA:   3'- cGCCga---UGCC-CCAgGCGCUGCAGUgG- -5'
11116 3' -59.2 NC_002794.1 + 182177 0.73 0.486754
Target:  5'- aGCGGCUguaccauaACGGGGccUCgGCGccgGCGUCGCg -3'
miRNA:   3'- -CGCCGA--------UGCCCC--AGgCGC---UGCAGUGg -5'
11116 3' -59.2 NC_002794.1 + 181586 0.77 0.305457
Target:  5'- -aGGCUGCGGG--CCGCGACcggGUCGCCc -3'
miRNA:   3'- cgCCGAUGCCCcaGGCGCUG---CAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.