miRNA display CGI


Results 1 - 20 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11117 3' -60.3 NC_002794.1 + 120855 0.66 0.807644
Target:  5'- cGCGGCCGucguCCagcGCCUcgGCUGGugUCCgaaCGGCg -3'
miRNA:   3'- -CGCCGGU----GG---UGGA--CGACC--AGGa--GCUG- -5'
11117 3' -60.3 NC_002794.1 + 8855 0.66 0.807644
Target:  5'- gGCGGCgACCcCCUGCgaguUCCUC-ACg -3'
miRNA:   3'- -CGCCGgUGGuGGACGacc-AGGAGcUG- -5'
11117 3' -60.3 NC_002794.1 + 74124 0.66 0.807644
Target:  5'- aGCaGGCCGCCGCC-GCc-GUCUcccuggUCGACa -3'
miRNA:   3'- -CG-CCGGUGGUGGaCGacCAGG------AGCUG- -5'
11117 3' -60.3 NC_002794.1 + 119546 0.66 0.806799
Target:  5'- cGCGGCCgucgccgGCCACgUGUcccGGagcgCCUUGACu -3'
miRNA:   3'- -CGCCGG-------UGGUGgACGa--CCa---GGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 17918 0.66 0.799127
Target:  5'- gGCaGCuCACCACCgGCcGGcUCCcCGACc -3'
miRNA:   3'- -CGcCG-GUGGUGGaCGaCC-AGGaGCUG- -5'
11117 3' -60.3 NC_002794.1 + 33417 0.66 0.799127
Target:  5'- cUGGCgCACgACCcucggGCUGGUCC-CGGu -3'
miRNA:   3'- cGCCG-GUGgUGGa----CGACCAGGaGCUg -5'
11117 3' -60.3 NC_002794.1 + 33705 0.66 0.799127
Target:  5'- gGCGGgCGa-GCC-GCUGGUCUaCGACg -3'
miRNA:   3'- -CGCCgGUggUGGaCGACCAGGaGCUG- -5'
11117 3' -60.3 NC_002794.1 + 103943 0.66 0.799127
Target:  5'- cGUGGCCGCCGCC-GCUcgccagccgccGGcgCUUCaGACu -3'
miRNA:   3'- -CGCCGGUGGUGGaCGA-----------CCa-GGAG-CUG- -5'
11117 3' -60.3 NC_002794.1 + 26107 0.66 0.799127
Target:  5'- cCGGCgAUCGCCg--UGGgccugCCUCGACg -3'
miRNA:   3'- cGCCGgUGGUGGacgACCa----GGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 49392 0.66 0.790472
Target:  5'- -aGGCCGCCGCCgucgGCcacGGcggCCgCGGCg -3'
miRNA:   3'- cgCCGGUGGUGGa---CGa--CCa--GGaGCUG- -5'
11117 3' -60.3 NC_002794.1 + 81187 0.66 0.790472
Target:  5'- aGCGGCUgucucuuguacgGCCGCCUGCUcccGcUCUUCGuCg -3'
miRNA:   3'- -CGCCGG------------UGGUGGACGA---CcAGGAGCuG- -5'
11117 3' -60.3 NC_002794.1 + 56909 0.66 0.790472
Target:  5'- cGUGGCCACgggCGCCggGCUGccggCCUCGcACc -3'
miRNA:   3'- -CGCCGGUG---GUGGa-CGACca--GGAGC-UG- -5'
11117 3' -60.3 NC_002794.1 + 127602 0.66 0.790472
Target:  5'- cGCGGCCGCUgagcggcgcggACCgGaCUcGUCgUCGACg -3'
miRNA:   3'- -CGCCGGUGG-----------UGGaC-GAcCAGgAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 107821 0.66 0.790472
Target:  5'- cGCGGUCACCAagaCguuuCUGGUCUUCuuGGCc -3'
miRNA:   3'- -CGCCGGUGGUg--Gac--GACCAGGAG--CUG- -5'
11117 3' -60.3 NC_002794.1 + 102094 0.66 0.790472
Target:  5'- aCGaGCCGCCGCCcacggUGCgGGUCaucuacggCGACa -3'
miRNA:   3'- cGC-CGGUGGUGG-----ACGaCCAGga------GCUG- -5'
11117 3' -60.3 NC_002794.1 + 68685 0.66 0.785215
Target:  5'- cGUGGCCGCCccACCccagucuccgcgagcUGCUcgccccaccccgGGUCUUCGAa -3'
miRNA:   3'- -CGCCGGUGG--UGG---------------ACGA------------CCAGGAGCUg -5'
11117 3' -60.3 NC_002794.1 + 156418 0.66 0.785215
Target:  5'- cGCGGCCACgGCCgGCgGGUgagagaccggucgcgCCgaaGGCg -3'
miRNA:   3'- -CGCCGGUGgUGGaCGaCCA---------------GGag-CUG- -5'
11117 3' -60.3 NC_002794.1 + 181408 0.66 0.781686
Target:  5'- cCGGCCGCCGCCaccGCcauGUCCgcgaagccgUCGGCg -3'
miRNA:   3'- cGCCGGUGGUGGa--CGac-CAGG---------AGCUG- -5'
11117 3' -60.3 NC_002794.1 + 180029 0.66 0.781686
Target:  5'- cGCGGCCGuCCgACCcGCaucacGUCCUCGuCa -3'
miRNA:   3'- -CGCCGGU-GG-UGGaCGac---CAGGAGCuG- -5'
11117 3' -60.3 NC_002794.1 + 41246 0.66 0.781686
Target:  5'- cGCGGCCGCCgacGCCgGC-GGcCCgUCGuCg -3'
miRNA:   3'- -CGCCGGUGG---UGGaCGaCCaGG-AGCuG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.